Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g396 ATGGGAAACTATATTTCATGCACTCTAATCACCCCTACCATCAAGAGCTCCAAGGCAGCCAGAGTGATCTTCCCCACCGGCGAAGTTCGACAGTTCCGGGAACCCCTCAAAGCGGCCGAGCTGATGCTGGAGTCCCCGAACTTCTTCCTGGTTAATTCCAAGTCTCTGCATATGGGTCGTAGGTTCAATCCACTTACAGCGGATGAGGACTTGGAGTTCGGCAATTTATACATCCTGTTCCCGATGAAAAGAGTGAATTCTGTTGTTACCGCAGCCGACATGGCGGTGTACTTGTTAGCTGCCAATTCCGCCGCCAAGAGGATAAGCGGTGGAAAGCGGTGGAGAATGAAGCTGGGGTTTCTCACTCCATTTCTCTGCATTCGCTCACCTTCCATCACCTCCATGGCCGGAATCAAGCTCTCGCCGGAGGATTCTGAGTTCTCCCAGCCCTCCCGAGCTCCGGCCTCCGCTGACCTTGCATCCGTCGTCTCTGACGACGATCGTTCTGTCGCTGCCGATTCTTGGTCGATTAAGAGCGACTACGGGAGCACTATGGATGACGATCAGCGTCATGCAGATGCCGCCGAGGTGCTCTCCTCCACTGTCCTAGGCTCTGCCGATTACAGTTCTGACAAGGAAGAGCCATATGTTGAAGTTGACAACTCAATGCTAGGTTTACAGAGTCATTGGGATGCAACATATGCAGGTGACTTGGCAAACTTTCACGTGCATGGCCATGCTGGTGAAGTTTGGTTTGGTGCTGTAGTCATGAGTGTGGTTGCATCCTGGACAAAGAACCTCTGTATAGACATTTCTCAAGATTTGGCTAGATGGAGAGTGCTTGATGTTGGAATTGGCAACGGTCTACTTCTTCAAGAACTTGCTAAGCAAGGGTTCTCTGATTTGACTGGAATTGATTATAGTGAAGGTGCTATTAACCTTGCTCAGAACCTTGCTGATCGTGATGGATTCACCAGCATTAACTTCTTGGTTGATGACAATCTTGAGACAAAATTGGAGAGGCAGTTCCAACTTGTTATGGATAAAGGAACTTTAGATGCTATTGGGTTGCATCCTGATGATCCCATCAAAAGGATTATGTATTGGGATTCTATCTCAAGGTTGGTGGTGCCTGGTGGTATATTGGTGATTACATCATGTAAGAGTACAAAAGATGAATTGATGCAAGAGGTGGATGCTTTCAACCGAAGAAGGCTCAGTTCCTCCCAGGAGCCAGAGATCCCGAAGGACCAAGATGCACCCAGAGATTATCCATTTAAATACCTGAGTCATTTTCAATCTGATAGTACATCAGTGTTAGGAGTGGTAGGCTCACTAGTTGTCACTGTTGCATTTCTTCGAGGCTAA 1368 47.95 MGNYISCTLITPTIKSSKAARVIFPTGEVRQFREPLKAAELMLESPNFFLVNSKSLHMGRRFNPLTADEDLEFGNLYILFPMKRVNSVVTAADMAVYLLAANSAAKRISGGKRWRMKLGFLTPFLCIRSPSITSMAGIKLSPEDSEFSQPSRAPASADLASVVSDDDRSVAADSWSIKSDYGSTMDDDQRHADAAEVLSSTVLGSADYSSDKEEPYVEVDNSMLGLQSHWDATYAGDLANFHVHGHAGEVWFGAVVMSVVASWTKNLCIDISQDLARWRVLDVGIGNGLLLQELAKQGFSDLTGIDYSEGAINLAQNLADRDGFTSINFLVDDNLETKLERQFQLVMDKGTLDAIGLHPDDPIKRIMYWDSISRLVVPGGILVITSCKSTKDELMQEVDAFNRRRLSSSQEPEIPKDQDAPRDYPFKYLSHFQSDSTSVLGVVGSLVVTVAFLRG* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4117217 4124629 + Vvi1g396 Vvi1g396 769596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g396 455 Pfam PADRE domain 1 109 IPR025322 -
Vvi1g396 455 Gene3D Vaccinia Virus protein VP39 224 411 IPR029063 -
Vvi1g396 455 PANTHER PROTEIN-LYSINE N-METHYLTRANSFERASE 102587567 135 454 - -
Vvi1g396 455 Pfam Methyltransferase domain 279 399 IPR025714 -
Vvi1g396 455 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 228 400 IPR029063 -
Vvi1g396 455 Hamap EEF1A lysine methyltransferase 2 [EEF1AKMT2]. 216 455 IPR026635 GO:0008168
Vvi1g396 455 PANTHER PROTEIN-LYSINE N-METHYLTRANSFERASE METTL10 135 454 - -
Vvi1g396 455 CDD AdoMet_MTases 279 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g396 K22856 EEF1AKMT2, EFM4, METTL10; EEF1A lysine methyltransferase 2 [EC:2.1.1.-] - vvi:100252620 590.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g396 Vvi14g815 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0786 Cone19ag0790 . . . . . . . . . . . . . . . . Cmo15g00994 . Cma15g00954 . Car15g00899 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005855 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 2 2 39