Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g399 ATGAAGTTCTTGGAATACACTCCTTTGGATCGTATAAATGATTTCTTAAGTCATGTAAATCTTGGGGAGCGAACCATTAAAGGATGCCTTGAGGCCTATTCCTGCAAACATACGGGAACTGATAAAAAACTGTCTCTCAGTTTGGAGTATGAGATTCTTGATTATCTTGGAAAATCTTCAGATACCGAATCTTCTTCACCGGCCGAATTTCTGTGCAGCAGATCCAGCCGAAAGACATTGGTATACCTGGTTCTTACCCTGTATCACATGTATCCAGATTATGACTTCAGTGCGGTGAAAGCTCACCACTTTTTCACAGAGGAAAGCTGGGACAGTTTTAAGCAGATATTTGATGCCTACATGTTTGAATCATCAAAGGAATGGATTGAGGCAAATGGGGTCTCCCTGCTGGAGAGCTTGTACAAGGCTCTGGATGAGGTTGTAAAACTAGCAGAATGTGACATATATAGTTACAATCCGGACTCTGATGCAGACCCATTTTTAGAGAGGGGAGCCATATGGTCATTCAATTTCTTCTTCTATAATAGAAAGCTAAAACGTGTTGTGAGCTTCCGATTCTGCTGTCTTAGTAACTTGATGGCTGAGGGATTTCTCATAGATGAGTTCTGTAACGAGGAAGATGGGGAAATATTTGATGATATGGACATGTGA 672 41.07 MKFLEYTPLDRINDFLSHVNLGERTIKGCLEAYSCKHTGTDKKLSLSLEYEILDYLGKSSDTESSSPAEFLCSRSSRKTLVYLVLTLYHMYPDYDFSAVKAHHFFTEESWDSFKQIFDAYMFESSKEWIEANGVSLLESLYKALDEVVKLAECDIYSYNPDSDADPFLERGAIWSFNFFFYNRKLKRVVSFRFCCLSNLMAEGFLIDEFCNEEDGEIFDDMDM* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4151718 4154782 + Vvi1g399 Vvi1g399 769599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g399 223 PANTHER REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 HOMOLOG 1 202 - -
Vvi1g399 223 PIRSF MAF1 1 222 IPR015257 GO:0016480
Vvi1g399 223 Gene3D Repressor of RNA polymerase III transcription Maf1 1 194 IPR038564 -
Vvi1g399 223 PANTHER REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 1 202 IPR015257 GO:0016480
Vvi1g399 223 Pfam Maf1 regulator 27 191 IPR015257 GO:0016480
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g399 K25817 MAF1; repressor of RNA polymerase III transcription MAF1 - vvi:100252568 462.225
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g399 . . . . . . . . . . . . . . Sed06g1918 . . Bhi07g01242 Tan04g0779 Cmetu10g0205 Lac13g0556 Hepe01g1142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010360 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 31