Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g4 ATGACAGGAGAAGGGAATTCAGGACATGGTGATAATTTCCATAATGTTATTATCATAGATGGTCCAAAGTCTGTACAACAGAATGTACAAGATTCTGGTGTAATGAGAAGAGACAAAAGGGTTCCATTGGAAAGCATTATTAGTATTGATGATGATGAAAGCACGGACATCCATCCTGAAAATGGTGCGGAAAGTCGTGGTGACTTGGATAGTGATGCCAGCTCAAGCAAGAGATCTTGTCCTGCTTCCAACCATTCACAAAATTCTGTGGGCTTAGAAGCTGAGGAATGTCAATTCATCCGAGAAAGAAAATCCCCAGTGAAGTTGTCAAAATGTAAGCGAACCTATTCTGGGAAAGCTCCCTCCAGAAACCGTTATGGTTTAGATCCCATGCCTGAAAGTACTTCGCCTGAAAGTACTTCATCTGAAAGTGGTTTATCTGATTGTGAGCTTATGGAAGGTTCTAGGGGAAAGCTTCATGAACAGTGGGAACAAGCTTACTTAAAGAGAAAAGATGTCCCTCAAACTGCCAAATCTGATTTGGGGGATCAGCCTAGTGCCTCTGGTTCTAACACTGATACTCCCCCAAATATTGAAGTAGAAAACATGACTGAACAACATCAAGAAACCCCAGTATGTTCTAGTTCAAGCAATGAAAATTTTGAAAAAGAAAACCTACCTTCCTTTTTTGCTCCTGATGGCAGCAATTTGGGTGCTACTTCTCCAAATCCTGAAGTTGAGAATCCCTTTGCAGAATTTGAATTTAAATTTGATGAGGAGAGTTCAAGGTGTAAAATTGAGTCAATGGAAAAAACACAATTTTCTGATGTCAACAATGATGTTCAAGATGAAGAAGCTTCGTTCTGCAAGAGCCACAGTTCGGTGGAAACACAGGTTAATCTAGTTGCTTCGAGTGAAAAAGATGAAGGGCTCCATGAGGTACCTAATGGGTCTCATTTTCCAAATGAATCAAAATATGGAGGAACTATTTTCAAGGGAAAAAAGAAATCAGTTTCTAGAGAACAGTCATTTTGGAAACCTCAACCATCTGATGAAACATGGATTAATTGTGGTGTAGCACCCTTCAAGGACAAAGTTCAAGTTGTTCCTGAAAAAGCTTTCTTCTGTACCTCTCTATTGGCAGAAAAGTTGGATGTTAGTAATGAAAAAGGTTCTTGTCTGGAAAGAAAGAAACCAGTTTCTGGGGAACCTTCTTCATGCCATGCTCCACCTAATGAAACACAAATTAAAAAGAGCAAATCTTGTTTGATGAGGAAGGAACTAATTGCTGAATCTATGCCTGTCAGTGAACAAGATAATAAAATTGATGATATAACACATGCTCAAAATGGTCAAAGAGATATAATCAATGAGCGAGAGAAGCTCAAGGAGACTGAGGAGTACAAGCGAGCGATAGAAGAAGAATGGACATCCAGGCAGAGGCAGTTACAGTTACAGGCAGAAGAAGTGCAGCGGTTGAAGAAGAGAAGAAAAGCCGAAAATACACGTTTATTGGACATGGAGAGAAGACAAAAGCAGCGTGTCCAAGAAATGAGAGAGACACAAAAAAAGGATGAAGAGAATATGAACATGAAAGAGAAAATTCGTCTTGAAGTACGGAAAGAACTTGATAAATTGGAAATGACATGTAGTGATATGGCCTCATTACTTCGTGGCCTAGAAATCCATGTGGGAGGTGGTTTCTGTCCCTCATCAAATGAGGTCCATGCAGCTTATAAACGAGCCTTGTTAAAATTTCACCCAGACCGAGCATCTAGAACTGACATCTATCATCAGGTGGAGGCTGAGGAAAAATTTAAGCTTATTTCTCGCATGAAAGAAAAGTTTTTATTGCCTTCATGA 1863 39.67 MTGEGNSGHGDNFHNVIIIDGPKSVQQNVQDSGVMRRDKRVPLESIISIDDDESTDIHPENGAESRGDLDSDASSSKRSCPASNHSQNSVGLEAEECQFIRERKSPVKLSKCKRTYSGKAPSRNRYGLDPMPESTSPESTSSESGLSDCELMEGSRGKLHEQWEQAYLKRKDVPQTAKSDLGDQPSASGSNTDTPPNIEVENMTEQHQETPVCSSSSNENFEKENLPSFFAPDGSNLGATSPNPEVENPFAEFEFKFDEESSRCKIESMEKTQFSDVNNDVQDEEASFCKSHSSVETQVNLVASSEKDEGLHEVPNGSHFPNESKYGGTIFKGKKKSVSREQSFWKPQPSDETWINCGVAPFKDKVQVVPEKAFFCTSLLAEKLDVSNEKGSCLERKKPVSGEPSSCHAPPNETQIKKSKSCLMRKELIAESMPVSEQDNKIDDITHAQNGQRDIINEREKLKETEEYKRAIEEEWTSRQRQLQLQAEEVQRLKKRRKAENTRLLDMERRQKQRVQEMRETQKKDEENMNMKEKIRLEVRKELDKLEMTCSDMASLLRGLEIHVGGGFCPSSNEVHAAYKRALLKFHPDRASRTDIYHQVEAEEKFKLISRMKEKFLLPS* 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48573 58015 + Vvi1g4 Vvi1g4 769204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g4 620 Coils Coil 483 525 - -
Vvi1g4 620 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 617 - -
Vvi1g4 620 Coils Coil 455 475 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 395 419 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 110 250 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 179 224 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 153 177 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 304 327 - -
Vvi1g4 620 SUPERFAMILY Chaperone J-domain 513 612 IPR036869 -
Vvi1g4 620 Gene3D DnaJ domain 570 616 IPR036869 -
Vvi1g4 620 MobiDBLite consensus disorder prediction 74 92 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 1 92 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 133 148 - -
Vvi1g4 620 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 617 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 33 73 - -
Vvi1g4 620 CDD DnaJ 571 610 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g4 - - - vvi:100257674 1195.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g4 . . . . . . Bma14g01717 Bma15g00110 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0892 Cone19ag0891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005168 0 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 7 1 40