Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g4 ATGACAGGAGAAGGGAATTCAGGACATGGTGATAATTTCCATAATGTTATTATCATAGATGGTCCAAAGTCTGTACAACAGAATGTACAAGATTCTGGTGTAATGAGAAGAGACAAAAGGGTTCCATTGGAAAGCATTATTAGTATTGATGATGATGAAAGCACGGACATCCATCCTGAAAATGGTGCGGAAAGTCGTGGTGACTTGGATAGTGATGCCAGCTCAAGCAAGAGATCTTGTCCTGCTTCCAACCATTCACAAAATTCTGTGGGCTTAGAAGCTGAGGAATGTCAATTCATCCGAGAAAGAAAATCCCCAGTGAAGTTGTCAAAATGTAAGCGAACCTATTCTGGGAAAGCTCCCTCCAGAAACCGTTATGGTTTAGATCCCATGCCTGAAAGTACTTCGCCTGAAAGTACTTCATCTGAAAGTGGTTTATCTGATTGTGAGCTTATGGAAGGTTCTAGGGGAAAGCTTCATGAACAGTGGGAACAAGCTTACTTAAAGAGAAAAGATGTCCCTCAAACTGCCAAATCTGATTTGGGGGATCAGCCTAGTGCCTCTGGTTCTAACACTGATACTCCCCCAAATATTGAAGTAGAAAACATGACTGAACAACATCAAGAAACCCCAGTATGTTCTAGTTCAAGCAATGAAAATTTTGAAAAAGAAAACCTACCTTCCTTTTTTGCTCCTGATGGCAGCAATTTGGGTGCTACTTCTCCAAATCCTGAAGTTGAGAATCCCTTTGCAGAATTTGAATTTAAATTTGATGAGGAGAGTTCAAGGTGTAAAATTGAGTCAATGGAAAAAACACAATTTTCTGATGTCAACAATGATGTTCAAGATGAAGAAGCTTCGTTCTGCAAGAGCCACAGTTCGGTGGAAACACAGGTTAATCTAGTTGCTTCGAGTGAAAAAGATGAAGGGCTCCATGAGGTACCTAATGGGTCTCATTTTCCAAATGAATCAAAATATGGAGGAACTATTTTCAAGGGAAAAAAGAAATCAGTTTCTAGAGAACAGTCATTTTGGAAACCTCAACCATCTGATGAAACATGGATTAATTGTGGTGTAGCACCCTTCAAGGACAAAGTTCAAGTTGTTCCTGAAAAAGCTTTCTTCTGTACCTCTCTATTGGCAGAAAAGTTGGATGTTAGTAATGAAAAAGGTTCTTGTCTGGAAAGAAAGAAACCAGTTTCTGGGGAACCTTCTTCATGCCATGCTCCACCTAATGAAACACAAATTAAAAAGAGCAAATCTTGTTTGATGAGGAAGGAACTAATTGCTGAATCTATGCCTGTCAGTGAACAAGATAATAAAATTGATGATATAACACATGCTCAAAATGGTCAAAGAGATATAATCAATGAGCGAGAGAAGCTCAAGGAGACTGAGGAGTACAAGCGAGCGATAGAAGAAGAATGGACATCCAGGCAGAGGCAGTTACAGTTACAGGCAGAAGAAGTGCAGCGGTTGAAGAAGAGAAGAAAAGCCGAAAATACACGTTTATTGGACATGGAGAGAAGACAAAAGCAGCGTGTCCAAGAAATGAGAGAGACACAAAAAAAGGATGAAGAGAATATGAACATGAAAGAGAAAATTCGTCTTGAAGTACGGAAAGAACTTGATAAATTGGAAATGACATGTAGTGATATGGCCTCATTACTTCGTGGCCTAGAAATCCATGTGGGAGGTGGTTTCTGTCCCTCATCAAATGAGGTCCATGCAGCTTATAAACGAGCCTTGTTAAAATTTCACCCAGACCGAGCATCTAGAACTGACATCTATCATCAGGTGGAGGCTGAGGAAAAATTTAAGCTTATTTCTCGCATGAAAGAAAAGTTTTTATTGCCTTCATGA 1863 39.67 MTGEGNSGHGDNFHNVIIIDGPKSVQQNVQDSGVMRRDKRVPLESIISIDDDESTDIHPENGAESRGDLDSDASSSKRSCPASNHSQNSVGLEAEECQFIRERKSPVKLSKCKRTYSGKAPSRNRYGLDPMPESTSPESTSSESGLSDCELMEGSRGKLHEQWEQAYLKRKDVPQTAKSDLGDQPSASGSNTDTPPNIEVENMTEQHQETPVCSSSSNENFEKENLPSFFAPDGSNLGATSPNPEVENPFAEFEFKFDEESSRCKIESMEKTQFSDVNNDVQDEEASFCKSHSSVETQVNLVASSEKDEGLHEVPNGSHFPNESKYGGTIFKGKKKSVSREQSFWKPQPSDETWINCGVAPFKDKVQVVPEKAFFCTSLLAEKLDVSNEKGSCLERKKPVSGEPSSCHAPPNETQIKKSKSCLMRKELIAESMPVSEQDNKIDDITHAQNGQRDIINEREKLKETEEYKRAIEEEWTSRQRQLQLQAEEVQRLKKRRKAENTRLLDMERRQKQRVQEMRETQKKDEENMNMKEKIRLEVRKELDKLEMTCSDMASLLRGLEIHVGGGFCPSSNEVHAAYKRALLKFHPDRASRTDIYHQVEAEEKFKLISRMKEKFLLPS* 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48573 58015 + Vvi1g4 Vvi1g4 769204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g4 620 Coils Coil 483 525 - -
Vvi1g4 620 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 617 - -
Vvi1g4 620 Coils Coil 455 475 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 395 419 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 110 250 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 179 224 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 153 177 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 304 327 - -
Vvi1g4 620 SUPERFAMILY Chaperone J-domain 513 612 IPR036869 -
Vvi1g4 620 Gene3D DnaJ domain 570 616 IPR036869 -
Vvi1g4 620 MobiDBLite consensus disorder prediction 74 92 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 1 92 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 133 148 - -
Vvi1g4 620 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 617 - -
Vvi1g4 620 MobiDBLite consensus disorder prediction 33 73 - -
Vvi1g4 620 CDD DnaJ 571 610 IPR001623 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g4 - - vvi:100257674 1195.65