Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g40 ATGGATGCAGAAGAGAGAAAGAAGAATTCATCGGAGGTGACAGTGGAAGAGTGGAGTGGGTCGTCTTCATCGAAGCTCTCTAGAACTGCAACCATCACTTCGCTGTCCATCCGGAGATCTGGCAGTCGGTTCAGCCATGTCTGGAGGCGGATTCTCCAGGCATTTGTACCGGAGGGTTTTCCTAGCAGTGTAACTCCAGATTATGCTCCTTTTCAATTATGGGATTCATTGCAGGGCCTCTCAACTTATATACGTACCATGCTTTCGACCCAAGCTCTCCTAAGCGCCATTGGGGTCGGTGAGAAATCAGCAACTGTCATTGGAGCCACGTTTCAGTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGGGATGTTAATGGATCTTGTTTCTCCTTTGTTCCCTTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCACTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGGAAGGAAGTCAAGAGACAGTAGCAACAATGGTTGGCATGGCTTTTGGAATGCTTCTTGCTCGCATTACAATGGGACACTCTGTTGCTATTTGGTTCTCTTTCCTTTCTCTCACCATGTTTCATATGTATGCAAACTACAGGGCTGTTCGTTGCCTTATATTAACAACATTGAACAGTGAGAGAAGCTCAATTCTTATAGAGCATTTCATGGAGACTGGCCAAGTTTTATCCCCACAAGAGGTCTCTAAGATGGAACATGTTCTACCTTTATGGGCCTCATCATGGAGCTTGAAGAATGCAAAGTCACTGCATACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGCCAAGTATTTGCTGCTGGAAAGGAAGGGAATCATCAGTGTTATTATGCATAAAGATTCAACAGCTTCAGATGTATTGCAATCATTCATTCATGCCCTTGTGATGGCAAACCTAGTGGATAAAAGCATATATATACATTTGGAGAGTCGATCATGGATGGATAAACAATATGAAAATTTTCTTCTTAAGTTACAGTCATCAGGTTGGAAAACAGAACGGCTACTGTCACCATCAATTATTTGGAGGGCAAATTGGATATGCGGGTCTTCAGATGAAAAGATTGAGTAG 1314 43.0 MDAEERKKNSSEVTVEEWSGSSSSKLSRTATITSLSIRRSGSRFSHVWRRILQAFVPEGFPSSVTPDYAPFQLWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLVSPLFPSAFVFIVCLGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMVGMAFGMLLARITMGHSVAIWFSFLSLTMFHMYANYRAVRCLILTTLNSERSSILIEHFMETGQVLSPQEVSKMEHVLPLWASSWSLKNAKSLHTRIHLGVRVSSLDKLEVTDLLHSAESHYKKAKYLLLERKGIISVIMHKDSTASDVLQSFIHALVMANLVDKSIYIHLESRSWMDKQYENFLLKLQSSGWKTERLLSPSIIWRANWICGSSDEKIE* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 482029 495575 + Vvi1g40 Vvi1g40 769240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g40 437 Pfam Vitamin B6 photo-protection and homoeostasis 45 281 IPR006968 -
Vvi1g40 437 PANTHER RUS1 FAMILY PROTEIN C16ORF58 4 436 IPR006968 -
Vvi1g40 437 PANTHER PROTEIN ROOT UVB SENSITIVE 3 4 436 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g40 - - vvi:100242289 826.624