Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g406 ATGACTAAAGATGAAGACTTTAAGCTCCTCAAGATCCAGACTTGTGTTCTCAAAGTGAACATACACTGTGATGGCTGTAAGCAGAAAGTGAAGAAACTTCTTCAGAGAATTGAAGGTGTGTACACAGTTAATATAGATGCAGAACAGCAGAGAGTCACAGTTTCAGGAAGTGTGGACTCTGGAACTTTGATAAAGAAACTGGTCAAAGCTGGTAAACATGCCGAGCTTTGGTCTCAGAAAAGCAACCAAAACCAAAAACAAAAAACCAACTGCATCAAAGATGACAAGAACAACAAAGGCCAAAAGCAAGGTTTGATCAAGGGACTTGAGGCCTTCAAAACCCAGCAAAAGTTCCCTGTTTTCAGCTCTGAAGAAGATGAAGATGATTTTGATGATGATGAAGAAGACTATGAAGAAGAAGAGCTTCGGTTTCTCCAGGAGAAAGCGAACCAACTTAGTCTGCTCCGGCAGCAAGCTCTTGATGCAAGCAATGCAAAGAAAGAATATGGGAATGAAGGGTAG 522 41.19 MTKDEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYTVNIDAEQQRVTVSGSVDSGTLIKKLVKAGKHAELWSQKSNQNQKQKTNCIKDDKNNKGQKQGLIKGLEAFKTQQKFPVFSSEEDEDDFDDDEEDYEEEELRFLQEKANQLSLLRQQALDASNAKKEYGNEG* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4242906 4245730 + Vvi1g406 Vvi1g406 769606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g406 173 Gene3D - 12 84 - -
Vvi1g406 173 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872
Vvi1g406 173 MobiDBLite consensus disorder prediction 124 141 - -
Vvi1g406 173 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 37 1 167 - -
Vvi1g406 173 MobiDBLite consensus disorder prediction 78 100 - -
Vvi1g406 173 CDD HMA 16 75 IPR006121 GO:0046872
Vvi1g406 173 Coils Coil 142 162 - -
Vvi1g406 173 ProSiteProfiles Heavy-metal-associated domain profile. 20 76 IPR006121 GO:0046872
Vvi1g406 173 MobiDBLite consensus disorder prediction 119 141 - -
Vvi1g406 173 SUPERFAMILY HMA, heavy metal-associated domain 12 78 IPR036163 GO:0046872
Vvi1g406 173 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g406 - - - vvi:100249220 285.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g406 Vvi14g788 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00865 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010233 3 1 3 2 2 1 1 0 1 1 0 0 1 1 1 1 0 2 0 0 1 1 1 1 1 0 1 3 1 1 32