Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g407 ATGAATTTAGAACAAGAAAAATACAGCTTATCTACTTGCCCCTATTTTCCCCTATTCTTTTTTAATACTATTTTAGAAGACATTGCCATATTTGATCTCCTTTTAAAGCTAATTCTACCCTTCACAAGTTCATATCCGCACCCATCTCTTGTCCTCTTTCCCTCTCCCAACCCCCCTGCCTCGCTCCTCCCCCTCCCTCTCTCTCTCTCTCTGCATGTAACCAAATTGAACATGATGGTTATGGAGAAAATTCTGCTGTTTCATCTCCTTTCTTTAGCTTTGTTGGGAGCTGTTGTAGAGGCTACATGGTCAGATGACAGACTGATAAAGATATCACAGTTGAAAATGTTTGTTGATGAGCTTCCAGATATGCCAAAAATCCTCGGTTTCGACGTTGTCAATGGCGTTCCAGTTTCCAAGTCCCTGCAGATTGGCATGTTTTCGAAGAAATGGAAATTCCACAGAGATCTCCCGCCGACCCGTGTATTTGCCTATGGTACTTCCAATAACACCGCAACGGTTCCTGGTCCAACCATCGAGGCCCTCTACGGAGTTGACACCTACGTGACGTGGCGAAATTACCTCCCATCAAAACACATCTTACCCTGGGACCGAACCATCCCAACTGCCATTCCCGCCACGAAGAAGGGCGTCCCAACGGTGGTTCATCTCCACGGTGGCATCGACGAACCCCAGAGCGATGGAAACGCCAACTCATGGTTCACCCGTGGCTTCAGAGAAAGAGGCCCCACCTGGACCCAAAAGAAGTACCACTACTACAACATCCAGCAACCAGGCAATATGTGGTACCATGATCATGCAATGGGTTTGACTCGAGTCAACCTTCTGGCTGGCTTGATTGGGGCCTACATCATCCGTCATCCTGATATTGAGTCCCCACTCGGACTCCCTCATGGAAAGGAGTTTGATCGACCCTTGATGGTATTCGATCGAAGCTTTCGCACCGATGGTTCCATCTACATGAATAGAACAGGAAACAATCCCTCCATTCATCCACAATGGCAGCCGGAGTATTTTGGTGATGCAATCATAGTCAACGGAAAAGCCTGGCCACGTTTGACAGTACGACGTCGTAAATATAGATTCCGCATCATCAACGCAAGCAACGCTCGCTTCTTCGAGTTCTTCTTCACCAACGGTCTACGATTCATCCACGTCGGCTCCGACTCATCTTATAACAAACGTCCGGTCATGATAAAAAAAATCCTCCTGGCCCCATCAGAGATTGTCGATGTGATTGTTGACTTTTCGGAGTCGAAATCCGATTCAGCTATTCTAGCAAACGGTGCGGCTTATCCCTACCCAAGTGGCGACCCAGTCAACAAGTTCAACGGTAACGTGATGAAGTTCATCATCAAGCGGCAACGCGAGGTTGACACGTCGCGGGTCCCGAAGAGATTGATAAAATACCCATCACCCGATTTATCCAATGCAGCAGCAACACGGTACATAGCAATGTACGAGTACACGAGTCCCGCCGATGAGCCAACCCATCTGTTTTTGAACGGAAAACCGTACGAAGATCCGGCGACGGAGACACCCAAAGAGGGGACCAGTGAGATCTGGAACGTGATCAATCTGACGGAGGATAATCACCCGCTGCACATCCACCTGGGGCTGTTCGTGGTGTTAGAACAGAGAAAGCTGGTGGACGTGGAAAAGTTCAAGGAGTGCATGTTGAAGATCAACAATGCCGTCAAGTGCCAGATAAGCAAGTATGCACGTGGCAACATAACAGCAGTGCCAGCTCACGAGCAGGGTTGGAAAAATGTGTTCAAGATGACGCCGGGGTACGTGACCAAAATACTGGTGAGATTTGCTTACATACACTCCAACGCATCGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACATTTTGGATCATGAAGACAATGCGATGATGAGGCCCTTGAAGTTCATAAAATAA 1965 48.09 MNLEQEKYSLSTCPYFPLFFFNTILEDIAIFDLLLKLILPFTSSYPHPSLVLFPSPNPPASLLPLPLSLSLHVTKLNMMVMEKILLFHLLSLALLGAVVEATWSDDRLIKISQLKMFVDELPDMPKILGFDVVNGVPVSKSLQIGMFSKKWKFHRDLPPTRVFAYGTSNNTATVPGPTIEALYGVDTYVTWRNYLPSKHILPWDRTIPTAIPATKKGVPTVVHLHGGIDEPQSDGNANSWFTRGFRERGPTWTQKKYHYYNIQQPGNMWYHDHAMGLTRVNLLAGLIGAYIIRHPDIESPLGLPHGKEFDRPLMVFDRSFRTDGSIYMNRTGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFEFFFTNGLRFIHVGSDSSYNKRPVMIKKILLAPSEIVDVIVDFSESKSDSAILANGAAYPYPSGDPVNKFNGNVMKFIIKRQREVDTSRVPKRLIKYPSPDLSNAAATRYIAMYEYTSPADEPTHLFLNGKPYEDPATETPKEGTSEIWNVINLTEDNHPLHIHLGLFVVLEQRKLVDVEKFKECMLKINNAVKCQISKYARGNITAVPAHEQGWKNVFKMTPGYVTKILVRFAYIHSNASYPFDASAEPGYVYHCHILDHEDNAMMRPLKFIK* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4259393 4264674 + Vvi1g407 Vvi1g407 769607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g407 654 ProSitePatterns Multicopper oxidases signature 2. 635 646 IPR002355 GO:0005507
Vvi1g407 654 CDD CuRO_2_CotA_like 309 460 - -
Vvi1g407 654 CDD CuRO_3_CotA_like 488 651 - -
Vvi1g407 654 SUPERFAMILY Cupredoxins 478 650 IPR008972 -
Vvi1g407 654 Pfam Multicopper oxidase 348 435 IPR001117 -
Vvi1g407 654 PANTHER MULTICOPPER OXIDASE LPR1 105 650 - -
Vvi1g407 654 PANTHER MULTI-COPPER OXIDASE 105 650 IPR045087 -
Vvi1g407 654 Gene3D - 477 654 IPR008972 -
Vvi1g407 654 CDD CuRO_1_BOD_CotA_like 141 295 - -
Vvi1g407 654 Gene3D - 296 475 IPR008972 -
Vvi1g407 654 SUPERFAMILY Cupredoxins 120 297 IPR008972 -
Vvi1g407 654 SUPERFAMILY Cupredoxins 308 425 IPR008972 -
Vvi1g407 654 Pfam Multicopper oxidase 495 650 IPR011706 GO:0005507|GO:0016491
Vvi1g407 654 Gene3D - 112 292 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g407 - - - vvi:100244049 1183.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g407 . . . . . . . . . . . . . . . . Cpe01g01885 . . . . . . . . . . . . . . . Cone19ag0777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006017 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 3 3 1 1 1 1 1 38