Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g409 ATGATGGTTATGGAGAAAATTCTGCTGTTTCATCTCCTTTCTTTAGCTTTGTTGGGAGCTGTTGTAGAGGCTACACGGTCAGATGACAGACTGATAAAGATATCACAGTTGAAAATGTTTGTTGATGAGCTTCCAGACATGCCAAAAATCCTCGGTTTCGACGTTGTCAATGGCGTTCCAGTTTCCAAGTCCCTGCAGATTGGCATGTTTTCGAAGAAATGGAAATTCCACAGAGATCTCCCGCCGACCCGTGTATTTGCCTATGGTACTTCCAATAACACCGCAACGGTTCCTGGTCCAACCATCGAGGCCCTCTACGGAGTTGACACTTACGTGACGTGGCGAAATTACCTCCCATCAAAACACATCTTACCCTGGGACCCAACCATCCCAACTGCCATTCCCGCCACGAAGAAGGGCGTCCCAACGGTTGTTCATCTCCACGGGGGCATCGACGAACCCCAGAGCGATGGAAACGCCAACTCATGGTTCACCCGTGGCTTCAGAGAAAGAGGCCCCACCTGGACCCAAAAGAAGTACCACTACTACAACATCCAGCAACCAGGCAATATGTGGTACCATGATCATGCAATGGGTTTGACTCGAGTCAACCTTCTGGTTGGCTTGATTGGGGCCTACATCATCCGTCATCCTGATATTGAGTCCCCACTCGGACTCCCTCATGGAAAGGAGTTTGATCGACCCTTGGTCGTATTCGATCGAAGCTTTCGCACCGATGGTTCCATCTACATGAATAGAACAGGAAACAATCCCTCCATTCATCCACAATGGCAGCCGGAGTATTTTGGTGATGCAATCATAGTCAACGGAAAAGCCTGGCCACGTTTGACAGTACGACGTCGTAAATATAGATTCCGCATCATCAACGCAAGCAACGCTCGCTTCTTCGAGTTCTTCTTCACCAACGGTCTACGATTCATCCACGTCGGCTCCGACTCATCTTATAACAAACGTCCGGTCATGATAAAAAAAATCCTCCTGGCCCCATCAGAGATTGTCGATGTGATTGTTGACTTTTCGGAGTCGAAATCCGATTCGGCTATTCTAGCAAACGGTGCGGCTTATCCCTACCCAAGTGGCGACCCAGTCAACAAGTTCAACGGTAACGTGATGAAGTTCATCATCAAGCGGCAACGCGAGGTTGACACGTCGCGGGTCCCGAAGAGATTGATAAAATACCCATCACCCGATTTATCCAATGCAGCAGCAACACGGTACATAGCAATGTACGAGTACACGAGCCCCACCGATGAGCCAACCCATCTGTTTTTGAACGGAAAACCGTACGAAGCACCGGCGACGGAGACACCCAAAGAGGGGACCAGTGAGATCTGGAACGTGATCAATCTGACGGCGGATAATCACCCGCTGCACATCCACCTGGGGCTGTTCGTGGTGTTAGAACAGAGAAAGCTGGTGGACGTGGAAAAGTTCAAGGAGTGCATGTTGAAGATCAACAATGCCGTCAAGTGCCAGATAAGCAAGTATGCACGTGGCAACATAACAGCAGTGCCAGCTCACGAGCAGGGTTGGAAAAATGTGTTCAAGATGACGCCGGGGTATGTGACCAAAATACTGGTGAGATTTGCTTACATACACTCCAACGCATCGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAATAA 1734 49.13 MMVMEKILLFHLLSLALLGAVVEATRSDDRLIKISQLKMFVDELPDMPKILGFDVVNGVPVSKSLQIGMFSKKWKFHRDLPPTRVFAYGTSNNTATVPGPTIEALYGVDTYVTWRNYLPSKHILPWDPTIPTAIPATKKGVPTVVHLHGGIDEPQSDGNANSWFTRGFRERGPTWTQKKYHYYNIQQPGNMWYHDHAMGLTRVNLLVGLIGAYIIRHPDIESPLGLPHGKEFDRPLVVFDRSFRTDGSIYMNRTGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFEFFFTNGLRFIHVGSDSSYNKRPVMIKKILLAPSEIVDVIVDFSESKSDSAILANGAAYPYPSGDPVNKFNGNVMKFIIKRQREVDTSRVPKRLIKYPSPDLSNAAATRYIAMYEYTSPTDEPTHLFLNGKPYEAPATETPKEGTSEIWNVINLTADNHPLHIHLGLFVVLEQRKLVDVEKFKECMLKINNAVKCQISKYARGNITAVPAHEQGWKNVFKMTPGYVTKILVRFAYIHSNASYPFDASAEPGYVYHCHILDHEDNAMMRPLKFIK* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4273740 4277143 + Vvi1g409 Vvi1g409 769609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g409 577 CDD CuRO_2_CotA_like 232 383 - -
Vvi1g409 577 Gene3D - 35 215 IPR008972 -
Vvi1g409 577 Gene3D - 219 398 IPR008972 -
Vvi1g409 577 SUPERFAMILY Cupredoxins 401 573 IPR008972 -
Vvi1g409 577 SUPERFAMILY Cupredoxins 47 220 IPR008972 -
Vvi1g409 577 SUPERFAMILY Cupredoxins 231 348 IPR008972 -
Vvi1g409 577 Pfam Multicopper oxidase 271 358 IPR001117 -
Vvi1g409 577 PANTHER MULTICOPPER OXIDASE LPR1 28 573 - -
Vvi1g409 577 Gene3D - 400 577 IPR008972 -
Vvi1g409 577 PANTHER MULTI-COPPER OXIDASE 28 573 IPR045087 -
Vvi1g409 577 CDD CuRO_1_BOD_CotA_like 64 218 - -
Vvi1g409 577 CDD CuRO_3_CotA_like 411 574 - -
Vvi1g409 577 Pfam Multicopper oxidase 418 573 IPR011706 GO:0005507|GO:0016491
Vvi1g409 577 ProSitePatterns Multicopper oxidases signature 2. 558 569 IPR002355 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g409 - - - vvi:100266384 1180.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .