Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g412 | ATGGACGCCGGCGGCGAGCTCTTGGCCCTCGTGAACGACGTCGTGGGGGTCTCCGTTGGGTTTGGAGGTGTGTTCAAGCGGGATTGCACGGATCTTGTCCGTAGGATCGCGCTTTTGACGCATTTGTTCGAGGAGATCAGAGATTTCGGGGCTGGTTTGAGGCCTTTGGATGTGTCGACTTCATCGGCGTCTCCCTTGACTTGCCTGTCTGAAGTAGCCAATGCTCTTCAGGCTGCTAAGCGCCTTCTGTCCGCCGCTGGAAATTTCAGTTCCGACGCCTTTTCTGATGGAGCTGCCAAGAAAATTACCTTCCAATTTCAATGTGTTACATGGAAATTGGAAAAAACATTGGGAAATCTACCATATGATCATTTTGAAATCTCAGAGGAAGTTCGAGAACAGGTTGAATTGGTTAGAGCACAGTTGAGAAGAGCAACAGAAAGATATGGTCCTCTGAATTCAAAAGTGGTATCTTGTGCTCTATCCCTGCCATTGGACAGAGAAATTCATCCTCGACAGTCTGGAAACAGGGCCAAGATGGACAGTGTCCCAAAATGTAACGATTCTCACAGCATTACAGATCAGTTTGTTCCTGAATCTGGAAGGCTAAGTAACTCATCTGCATCAGCTGAGGCCCATCTATCGAATGACATTGATGCAGAAAAAGGTCACAAATCAGCTACAAAGAGTCTAGAGGAAATTAAGAAGCCTGACTCTGTTGTAATTCCCAATGATTTCCTATGCCCTATATCCCTCGAACTGATGAGGGATCCTGTTATTGTGGCCACAGGACAGACCTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGCAACTTAACATGTCCAAAAACACAGCTTGAGCTTCAAAATCTGACACTCACCCCAAATTATGCTTTGAGAAGTTTAATTACTCAATGGTGCACTAAGAACAATATTGAGCAACCAACTGGATTAGTCAATGGGAGGATAAAAAAGAGTGATGGGACATTTCGTGATGTCAGTGGAGATATAGCAGCCATTGAGGCATTGGTCCGCAAACTATCAAGCTGGTCCATTGAGGAGCGCAGAGCTGCTGCTACTGAAATCCGATCACTCTCCAAACGAAGCACGGATAACAGGATACTAATAGCAGAAGCAGGAGCCATTCCAGCTCTAGTCAACCTGTTAACAACAGATGATGTGGTAACTCAAGAAAATGCAGTTACTTCCATTCTAAACCTCTCCATTTATGAGAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCTTCTATTGTCCTAGTCCTTAGAAGTGGAAGCATGGAGGCAAGGGAGAATGCTGCCGCAACACTTTTTAGCTTGTCAGTTGCAGATGAGAACAAAATTATAATAGGTGCCTCTGGAGCAATGCCGGCTTTGGTAGAACTGCTCCAAAACGGAAGCACGAGAGGAAAGAAAGATGCTGCAACAGCACTTTTCAATTTATGCATTTATCAAGGAAACAAGAGCAGGGCTGTGAAGGCAGGGATCATTACTGCATTATCAAAGATGCTCACAGATTTAAACAATTGCATGGTGGATGAAGCTCTCACAATACTATCCGTTCTTTCTAGCCACCAAGAAGCTAAAATTTCCATAGTAAAGGCTAGCATCATACCAGTATTGATAGATCTTTTGAGGACAGGTCTGCCCCGCAACAAAGAGAATGCTGCTGCCATTTTGCTTTCCCTGTGCAAGAGAGATAATGAGAATCTTGCCTGTATTAGTAGGCTTGGCGCTGTCATACCCCTTGCTGAGCTTGCTAAGAGCGGCACAGAGAGGGCCAAGCGCAAGGCTACTTCATTGTTGGAGCATCTTCAAAGATTACAGCAACTCTGA | 1866 | 44.96 | MDAGGELLALVNDVVGVSVGFGGVFKRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDVSTSSASPLTCLSEVANALQAAKRLLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQLRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRAKMDSVPKCNDSHSITDQFVPESGRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALRSLITQWCTKNNIEQPTGLVNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAATEIRSLSKRSTDNRILIAEAGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLAGAIPSIVLVLRSGSMEARENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKKDAATALFNLCIYQGNKSRAVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISIVKASIIPVLIDLLRTGLPRNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTERAKRKATSLLEHLQRLQQL* | 622 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4353648 | 4358006 | + | Vvi1g412 | Vvi1g412 | 769612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g412 | 621 | SMART | arm_5 | 412 | 452 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SMART | arm_5 | 494 | 534 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SMART | arm_5 | 535 | 575 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SMART | arm_5 | 577 | 617 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SMART | arm_5 | 453 | 493 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SMART | arm_5 | 371 | 411 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 464 | 506 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | SUPERFAMILY | ARM repeat | 341 | 615 | IPR016024 | - | |
Vvi1g412 | 621 | Gene3D | - | 325 | 414 | IPR011989 | - | |
Vvi1g412 | 621 | Gene3D | - | 415 | 521 | IPR011989 | - | |
Vvi1g412 | 621 | Gene3D | - | 522 | 620 | IPR011989 | - | |
Vvi1g412 | 621 | ProSiteProfiles | U-box domain profile. | 241 | 315 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi1g412 | 621 | PANTHER | U BOX DOMAIN-CONTAINING | 9 | 618 | - | - | |
Vvi1g412 | 621 | CDD | RING-Ubox_PUB | 246 | 287 | IPR045210 | - | |
Vvi1g412 | 621 | Pfam | U-box domain | 242 | 313 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi1g412 | 621 | Coils | Coil | 601 | 621 | - | - | |
Vvi1g412 | 621 | MobiDBLite | consensus disorder prediction | 173 | 225 | - | - | |
Vvi1g412 | 621 | SMART | Ubox_2 | 245 | 308 | IPR003613 | GO:0004842|GO:0016567 | |
Vvi1g412 | 621 | SUPERFAMILY | RING/U-box | 240 | 316 | - | - | |
Vvi1g412 | 621 | Coils | Coil | 128 | 148 | - | - | |
Vvi1g412 | 621 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 382 | 424 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | MobiDBLite | consensus disorder prediction | 186 | 213 | - | - | |
Vvi1g412 | 621 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 423 | 465 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | Pfam | Armadillo/beta-catenin-like repeat | 372 | 410 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | Pfam | Armadillo/beta-catenin-like repeat | 454 | 492 | IPR000225 | GO:0005515 | |
Vvi1g412 | 621 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 11 | 9 | 618 | - | - | |
Vvi1g412 | 621 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 315 | IPR013083 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g412 | - | - | vvi:100264511 | 1152.5 |