Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g412 ATGGACGCCGGCGGCGAGCTCTTGGCCCTCGTGAACGACGTCGTGGGGGTCTCCGTTGGGTTTGGAGGTGTGTTCAAGCGGGATTGCACGGATCTTGTCCGTAGGATCGCGCTTTTGACGCATTTGTTCGAGGAGATCAGAGATTTCGGGGCTGGTTTGAGGCCTTTGGATGTGTCGACTTCATCGGCGTCTCCCTTGACTTGCCTGTCTGAAGTAGCCAATGCTCTTCAGGCTGCTAAGCGCCTTCTGTCCGCCGCTGGAAATTTCAGTTCCGACGCCTTTTCTGATGGAGCTGCCAAGAAAATTACCTTCCAATTTCAATGTGTTACATGGAAATTGGAAAAAACATTGGGAAATCTACCATATGATCATTTTGAAATCTCAGAGGAAGTTCGAGAACAGGTTGAATTGGTTAGAGCACAGTTGAGAAGAGCAACAGAAAGATATGGTCCTCTGAATTCAAAAGTGGTATCTTGTGCTCTATCCCTGCCATTGGACAGAGAAATTCATCCTCGACAGTCTGGAAACAGGGCCAAGATGGACAGTGTCCCAAAATGTAACGATTCTCACAGCATTACAGATCAGTTTGTTCCTGAATCTGGAAGGCTAAGTAACTCATCTGCATCAGCTGAGGCCCATCTATCGAATGACATTGATGCAGAAAAAGGTCACAAATCAGCTACAAAGAGTCTAGAGGAAATTAAGAAGCCTGACTCTGTTGTAATTCCCAATGATTTCCTATGCCCTATATCCCTCGAACTGATGAGGGATCCTGTTATTGTGGCCACAGGACAGACCTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGCAACTTAACATGTCCAAAAACACAGCTTGAGCTTCAAAATCTGACACTCACCCCAAATTATGCTTTGAGAAGTTTAATTACTCAATGGTGCACTAAGAACAATATTGAGCAACCAACTGGATTAGTCAATGGGAGGATAAAAAAGAGTGATGGGACATTTCGTGATGTCAGTGGAGATATAGCAGCCATTGAGGCATTGGTCCGCAAACTATCAAGCTGGTCCATTGAGGAGCGCAGAGCTGCTGCTACTGAAATCCGATCACTCTCCAAACGAAGCACGGATAACAGGATACTAATAGCAGAAGCAGGAGCCATTCCAGCTCTAGTCAACCTGTTAACAACAGATGATGTGGTAACTCAAGAAAATGCAGTTACTTCCATTCTAAACCTCTCCATTTATGAGAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCTTCTATTGTCCTAGTCCTTAGAAGTGGAAGCATGGAGGCAAGGGAGAATGCTGCCGCAACACTTTTTAGCTTGTCAGTTGCAGATGAGAACAAAATTATAATAGGTGCCTCTGGAGCAATGCCGGCTTTGGTAGAACTGCTCCAAAACGGAAGCACGAGAGGAAAGAAAGATGCTGCAACAGCACTTTTCAATTTATGCATTTATCAAGGAAACAAGAGCAGGGCTGTGAAGGCAGGGATCATTACTGCATTATCAAAGATGCTCACAGATTTAAACAATTGCATGGTGGATGAAGCTCTCACAATACTATCCGTTCTTTCTAGCCACCAAGAAGCTAAAATTTCCATAGTAAAGGCTAGCATCATACCAGTATTGATAGATCTTTTGAGGACAGGTCTGCCCCGCAACAAAGAGAATGCTGCTGCCATTTTGCTTTCCCTGTGCAAGAGAGATAATGAGAATCTTGCCTGTATTAGTAGGCTTGGCGCTGTCATACCCCTTGCTGAGCTTGCTAAGAGCGGCACAGAGAGGGCCAAGCGCAAGGCTACTTCATTGTTGGAGCATCTTCAAAGATTACAGCAACTCTGA 1866 44.96 MDAGGELLALVNDVVGVSVGFGGVFKRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDVSTSSASPLTCLSEVANALQAAKRLLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQLRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRAKMDSVPKCNDSHSITDQFVPESGRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALRSLITQWCTKNNIEQPTGLVNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAATEIRSLSKRSTDNRILIAEAGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLAGAIPSIVLVLRSGSMEARENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKKDAATALFNLCIYQGNKSRAVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISIVKASIIPVLIDLLRTGLPRNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTERAKRKATSLLEHLQRLQQL* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4353648 4358006 + Vvi1g412 Vvi1g412 769612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g412 621 SMART arm_5 412 452 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 494 534 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 535 575 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 577 617 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 453 493 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 371 411 IPR000225 GO:0005515
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Vvi1g412 621 SUPERFAMILY ARM repeat 341 615 IPR016024 -
Vvi1g412 621 Gene3D - 325 414 IPR011989 -
Vvi1g412 621 Gene3D - 415 521 IPR011989 -
Vvi1g412 621 Gene3D - 522 620 IPR011989 -
Vvi1g412 621 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 PANTHER U BOX DOMAIN-CONTAINING 9 618 - -
Vvi1g412 621 CDD RING-Ubox_PUB 246 287 IPR045210 -
Vvi1g412 621 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 Coils Coil 601 621 - -
Vvi1g412 621 MobiDBLite consensus disorder prediction 173 225 - -
Vvi1g412 621 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 SUPERFAMILY RING/U-box 240 316 - -
Vvi1g412 621 Coils Coil 128 148 - -
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 382 424 IPR000225 GO:0005515
Vvi1g412 621 MobiDBLite consensus disorder prediction 186 213 - -
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Vvi1g412 621 Pfam Armadillo/beta-catenin-like repeat 372 410 IPR000225 GO:0005515
Vvi1g412 621 Pfam Armadillo/beta-catenin-like repeat 454 492 IPR000225 GO:0005515
Vvi1g412 621 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 9 618 - -
Vvi1g412 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g412 - - - vvi:100264511 1152.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
Vvi14g1600 . 1 1038 U-box Gene Family AT5G15400 78.3 0.0e+00 1575.1
Vvi7g972 . 1 644 U-box Gene Family AT5G67340 56.1 3.3e-137 486.1
Vvi7g972 . 196 683 U-box Gene Family AT2G23140 57.7 3.0e-89 326.6
Vvi1g1184 . 1 699 U-box Gene Family AT1G24330 64.9 1.1e-258 889.8
Vvi1g1184 . 1 683 U-box Gene Family AT1G67530 64.7 6.4e-251 864.0
Vvi4g791 . 135 456 U-box Gene Family AT3G07360 53.5 1.8e-85 313.2
Vvi1g412 . 147 416 U-box Gene Family AT1G71020 62.9 1.3e-84 310.8
Vvi13g546 . 213 385 U-box Gene Family AT1G71020 58.0 3.7e-47 186.4
Vvi1g412 . 7 620 U-box Gene Family AT1G23030 62.8 3.5e-127 452.6
Vvi6g428 . 91 338 U-box Gene Family AT2G28830 62.9 3.1e-77 286.6
Vvi13g546 . 3 549 U-box Gene Family AT3G46510 52.3 2.0e-128 456.8
Vvi6g428 . 1 337 U-box Gene Family AT3G46510 65.9 2.7e-117 419.9
Vvi3g278 . 23 627 U-box Gene Family AT3G46510 51.2 1.3e-87 321.2
Vvi13g546 . 4 552 U-box Gene Family AT3G54850 62.4 2.9e-169 592.4
Vvi3g278 . 19 633 U-box Gene Family AT5G42340 63.1 6.6e-140 495.0
Vvi18g1102 . 97 644 U-box Gene Family AT5G42340 69.0 3.1e-129 459.5
Vvi8g376 . 10 640 U-box Gene Family AT5G01830 57.4 9.3e-190 660.6
Vvi10g256 . 14 612 U-box Gene Family AT1G29340 57.3 3.1e-199 692.2
Vvi6g816 ECH 2 365 U-box Gene Family AT2G35930 52.4 6.2e-112 401.4
Vvi8g235 ECH 2 319 U-box Gene Family AT2G35930 53.8 2.6e-102 369.4
Vvi8g234 ECH 2 342 U-box Gene Family AT2G35930 51.0 1.1e-100 364.0
Vvi3g393 . 51 373 U-box Gene Family AT3G19380 55.4 3.7e-112 402.1
Vvi3g393 . 51 376 U-box Gene Family AT1G49780 55.4 2.7e-118 422.5
Vvi18g622 . 1 148 U-box Gene Family AT3G49810 72.7 7.3e-58 221.9
Vvi18g622 . 1 148 U-box Gene Family AT5G65920 67.3 4.4e-55 212.6
Vvi15g857 ECH 1 879 U-box Gene Family AT2G45910 50.8 9.9e-242 833.6
Vvi11g145 ECH 17 768 U-box Gene Family AT2G19410 50.6 1.1e-213 740.3
Vvi16g360 . 26 780 U-box Gene Family AT4G25160 53.9 1.8e-222 769.6
Vvi15g857 ECH 45 207 U-box Gene Family AT3G61390 52.8 1.6e-39 160.6
Vvi1g1184 . 1 691 U-box Gene Family AT1G27910 65.0 1.2e-257 886.3
Vvi7g920 . 1 598 U-box Gene Family AT5G67530 74.6 2.1e-262 901.7
Vvi7g928 . 1 99 U-box Gene Family AT5G67530 81.8 1.7e-46 184.5
Vvi16g360 . 1 780 U-box Gene Family AT5G61550 50.9 1.6e-226 783.1
Vvi5g778 . 1 524 U-box Gene Family AT1G04510 75.6 1.9e-230 795.4
Vvi5g778 . 1 488 U-box Gene Family AT2G33340 76.8 9.3e-216 746.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40