Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g412 ATGGACGCCGGCGGCGAGCTCTTGGCCCTCGTGAACGACGTCGTGGGGGTCTCCGTTGGGTTTGGAGGTGTGTTCAAGCGGGATTGCACGGATCTTGTCCGTAGGATCGCGCTTTTGACGCATTTGTTCGAGGAGATCAGAGATTTCGGGGCTGGTTTGAGGCCTTTGGATGTGTCGACTTCATCGGCGTCTCCCTTGACTTGCCTGTCTGAAGTAGCCAATGCTCTTCAGGCTGCTAAGCGCCTTCTGTCCGCCGCTGGAAATTTCAGTTCCGACGCCTTTTCTGATGGAGCTGCCAAGAAAATTACCTTCCAATTTCAATGTGTTACATGGAAATTGGAAAAAACATTGGGAAATCTACCATATGATCATTTTGAAATCTCAGAGGAAGTTCGAGAACAGGTTGAATTGGTTAGAGCACAGTTGAGAAGAGCAACAGAAAGATATGGTCCTCTGAATTCAAAAGTGGTATCTTGTGCTCTATCCCTGCCATTGGACAGAGAAATTCATCCTCGACAGTCTGGAAACAGGGCCAAGATGGACAGTGTCCCAAAATGTAACGATTCTCACAGCATTACAGATCAGTTTGTTCCTGAATCTGGAAGGCTAAGTAACTCATCTGCATCAGCTGAGGCCCATCTATCGAATGACATTGATGCAGAAAAAGGTCACAAATCAGCTACAAAGAGTCTAGAGGAAATTAAGAAGCCTGACTCTGTTGTAATTCCCAATGATTTCCTATGCCCTATATCCCTCGAACTGATGAGGGATCCTGTTATTGTGGCCACAGGACAGACCTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGCAACTTAACATGTCCAAAAACACAGCTTGAGCTTCAAAATCTGACACTCACCCCAAATTATGCTTTGAGAAGTTTAATTACTCAATGGTGCACTAAGAACAATATTGAGCAACCAACTGGATTAGTCAATGGGAGGATAAAAAAGAGTGATGGGACATTTCGTGATGTCAGTGGAGATATAGCAGCCATTGAGGCATTGGTCCGCAAACTATCAAGCTGGTCCATTGAGGAGCGCAGAGCTGCTGCTACTGAAATCCGATCACTCTCCAAACGAAGCACGGATAACAGGATACTAATAGCAGAAGCAGGAGCCATTCCAGCTCTAGTCAACCTGTTAACAACAGATGATGTGGTAACTCAAGAAAATGCAGTTACTTCCATTCTAAACCTCTCCATTTATGAGAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCTTCTATTGTCCTAGTCCTTAGAAGTGGAAGCATGGAGGCAAGGGAGAATGCTGCCGCAACACTTTTTAGCTTGTCAGTTGCAGATGAGAACAAAATTATAATAGGTGCCTCTGGAGCAATGCCGGCTTTGGTAGAACTGCTCCAAAACGGAAGCACGAGAGGAAAGAAAGATGCTGCAACAGCACTTTTCAATTTATGCATTTATCAAGGAAACAAGAGCAGGGCTGTGAAGGCAGGGATCATTACTGCATTATCAAAGATGCTCACAGATTTAAACAATTGCATGGTGGATGAAGCTCTCACAATACTATCCGTTCTTTCTAGCCACCAAGAAGCTAAAATTTCCATAGTAAAGGCTAGCATCATACCAGTATTGATAGATCTTTTGAGGACAGGTCTGCCCCGCAACAAAGAGAATGCTGCTGCCATTTTGCTTTCCCTGTGCAAGAGAGATAATGAGAATCTTGCCTGTATTAGTAGGCTTGGCGCTGTCATACCCCTTGCTGAGCTTGCTAAGAGCGGCACAGAGAGGGCCAAGCGCAAGGCTACTTCATTGTTGGAGCATCTTCAAAGATTACAGCAACTCTGA 1866 44.96 MDAGGELLALVNDVVGVSVGFGGVFKRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDVSTSSASPLTCLSEVANALQAAKRLLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQLRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRAKMDSVPKCNDSHSITDQFVPESGRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALRSLITQWCTKNNIEQPTGLVNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAATEIRSLSKRSTDNRILIAEAGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLAGAIPSIVLVLRSGSMEARENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKKDAATALFNLCIYQGNKSRAVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISIVKASIIPVLIDLLRTGLPRNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTERAKRKATSLLEHLQRLQQL* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4353648 4358006 + Vvi1g412 Vvi1g412 769612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g412 621 SMART arm_5 412 452 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 494 534 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 535 575 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 577 617 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 453 493 IPR000225 GO:0005515
Vvi1g412 621 SMART arm_5 371 411 IPR000225 GO:0005515
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Vvi1g412 621 SUPERFAMILY ARM repeat 341 615 IPR016024 -
Vvi1g412 621 Gene3D - 325 414 IPR011989 -
Vvi1g412 621 Gene3D - 415 521 IPR011989 -
Vvi1g412 621 Gene3D - 522 620 IPR011989 -
Vvi1g412 621 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 PANTHER U BOX DOMAIN-CONTAINING 9 618 - -
Vvi1g412 621 CDD RING-Ubox_PUB 246 287 IPR045210 -
Vvi1g412 621 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 Coils Coil 601 621 - -
Vvi1g412 621 MobiDBLite consensus disorder prediction 173 225 - -
Vvi1g412 621 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Vvi1g412 621 SUPERFAMILY RING/U-box 240 316 - -
Vvi1g412 621 Coils Coil 128 148 - -
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 382 424 IPR000225 GO:0005515
Vvi1g412 621 MobiDBLite consensus disorder prediction 186 213 - -
Vvi1g412 621 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Vvi1g412 621 Pfam Armadillo/beta-catenin-like repeat 372 410 IPR000225 GO:0005515
Vvi1g412 621 Pfam Armadillo/beta-catenin-like repeat 454 492 IPR000225 GO:0005515
Vvi1g412 621 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 9 618 - -
Vvi1g412 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g412 - - vvi:100264511 1152.5