Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g413 ATGGGGAACAGCTTAGGAGGGAAAAAGATTGCAAAGGTGATGAAGATAGATGGAGAGGTGATCAAGTTAAAGACTCCGGTGTACGCTGGTGAGGTAGTTAAGGACTACCCAGGTCATGTCTTGTTGGAATCGGAGGCGGTGAAGCATTTTGGCATTCGAGCAAAGCCCTTGGAATCACAACAAGAGCTTAAGCCCAAAAGGCTCTACTTCTTGGTAGAATTGCCCAAGGGTGCGGAAGAGAAAGTCCCTAGAAGGGTTCGGTCGGGGATAAACATGAGCGCCAAGGACAGGCTGGAGAGCCTAATGCTGTCTAGGAGGTCGGTTTCGGATCTTACCATCATGAAACCAGCTAGCATTGTACACCAGGAGCCCAAAGAAGCATCGGAGAGTGGAACAGTAAGGATGAAGATGAGGCTTCCAAAGGCCGAGGTCGAAAAGTTAATGAGGGAAAGCAAAGATGAAGCGGAGGCAGCTGAAAAGATTATGGATCTTTGTATAGCAAACAAGGGCGCTGGAGCCACTGCTGGTGGGGCAGTGCCTAAGAGGGACGAGGCCCATGAGGGCATGTTGCTGCAGCAGCAACAAATGCATTGGAATGGTGGTCATACAAGGCTTGGGGATGGTCTCAAGGCCCGCGAGAAGCGAGTGGGTTTCTTGCCAATTGCTGAGGGCGAGATTCAATTAGCTGTTGCTTAG 696 50.43 MGNSLGGKKIAKVMKIDGEVIKLKTPVYAGEVVKDYPGHVLLESEAVKHFGIRAKPLESQQELKPKRLYFLVELPKGAEEKVPRRVRSGINMSAKDRLESLMLSRRSVSDLTIMKPASIVHQEPKEASESGTVRMKMRLPKAEVEKLMRESKDEAEAAEKIMDLCIANKGAGATAGGAVPKRDEAHEGMLLQQQQMHWNGGHTRLGDGLKAREKRVGFLPIAEGEIQLAVA* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4359601 4363135 + Vvi1g413 Vvi1g413 769613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g413 231 Pfam PADRE domain 1 168 IPR025322 -
Vvi1g413 231 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 225 - -
Vvi1g413 231 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN 1 225 - -
Vvi1g413 231 Coils Coil 141 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g413 - - - vvi:100256093 441.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g413 Vvi14g777 ECH
Vvi1g413 Vvi17g229 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g413 . . . . . Bpe10g00992 . . Cmo04g01076 . Cma04g00998 . Car04g00937 Car04g00054 . . . . . . . . . . Cla07g00603 Cam07g0629 Cec07g0694 Cco07g0679 Clacu07g0634 Cmu07g0659 Cre07g1007 Cone13ag0772 Cone19ag0774 . . Lsi04g01142 . . Cme10g01505 . . . . Bpe11g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01045 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006957 2 1 0 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37