Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g417 ATGCAGCAAATAGGAGCTTCCGGAAGCATCTCCCAAAAATATCACCCAGGATCCCACAGATTGGTACAAATATCTGTTCTAAAGATGGAGTGCAGTCAGGGTTCCCCATCTTATTATAGCGTACTGGGCATCCGCACTGATTCGTCCATTGAAGAAATACGCCGCGCTTACCGCAAGCTTGCTATGAAATGGCATCCAGATAAGTGGACGAGAACCCCTTCTGTATTGGGTGAAGCCAAGCGTAAATTCCAGCAAATTCAGGAAGCCTATTCAGTACTATCAGACCAGAGGAAAAGAACAGTGTACGATGCAGGCTTGTATAACCCTGATGAAGAGGAGGACGAGGGCTTCTCTGATTTCTTGCAAGAAATGATATCACTTATGGCCAATGTCAAGAGAGAGGGTAAGATCTACACTAGGGAGGAACTACAAAGTATGTTAATGGAGATGGTCCGAGACTTTGAGTCTCCTCAGCTGTTTTGTGGAGCCTCGATTTTTGACAATTCTCGGAGCATGAAGAGAGGTCGATGGGAAACGAACTCAATGGTGGACAGAGGTTCACGTCTCCATGTGTATGGGACCAGCAGTTAG 591 46.19 MQQIGASGSISQKYHPGSHRLVQISVLKMECSQGSPSYYSVLGIRTDSSIEEIRRAYRKLAMKWHPDKWTRTPSVLGEAKRKFQQIQEAYSVLSDQRKRTVYDAGLYNPDEEEDEGFSDFLQEMISLMANVKREGKIYTREELQSMLMEMVRDFESPQLFCGASIFDNSRSMKRGRWETNSMVDRGSRLHVYGTSS* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4436443 4438194 + Vvi1g417 Vvi1g417 769617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g417 196 PANTHER PUTATIVE, EXPRESSED-RELATED 29 187 - -
Vvi1g417 196 SMART dnaj_3 36 98 IPR001623 -
Vvi1g417 196 SUPERFAMILY Chaperone J-domain 35 109 IPR036869 -
Vvi1g417 196 PRINTS DnaJ domain signature 57 72 IPR001623 -
Vvi1g417 196 PRINTS DnaJ domain signature 39 57 IPR001623 -
Vvi1g417 196 PRINTS DnaJ domain signature 78 98 IPR001623 -
Vvi1g417 196 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Vvi1g417 196 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 29 187 - -
Vvi1g417 196 Gene3D DnaJ domain 24 127 IPR036869 -
Vvi1g417 196 CDD DnaJ 38 95 IPR001623 -
Vvi1g417 196 ProSiteProfiles dnaJ domain profile. 37 106 IPR001623 -
Vvi1g417 196 Pfam DnaJ domain 38 103 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g417 - - - vvi:100261077 341.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g417 . . . . . . . . . . . Cma04g00058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00983 . Cma15g00945 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000888 2 3 1 2 3 3 5 3 3 2 2 3 3 3 3 4 3 4 5 3 3 2 3 3 4 2 2 3 3 2 87