Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g418 ATGGCAGGAGAGATCGAAGAGCCGTTTAGCCTTAACTTTCAGGCAGATTCCTTGCACTCAGGCTCTATTTCATTTGGAAGGTTTGAAACTGAATCATTATCTTGGGAAAGGAGGTCCTCCTTCTCACATAATAGATATCTTGAAGAAGTTGAAAAATACTCGAAACCAGGTTCAGTTACTGAGAAGAAAGCTTATTTTGAAGCTCACTTCAAGAAGAGAGCTCTTCTTAGTCAGAGTTTATCCGAGTGCCAAACTGGGACTGAATACCAAACCAGTGAAAATGATGTTATGGAGAACATAGGTTACAGAGAAGACTTTGAGCATGAGGAAGGTATCCACTTTGCTAACTTTGATGGGAGTCCTGGTGGCTCAGGTCATCATGGAGACTGTGAGGTGACAGAATGTGAAAGACAGGATACAGTAATCTCACATTCTGAGTTTCATGTGGAGCTTGCTTTCAACAATACCAATGTTGTTGAGGACAATGTTTTTAAACAGGTTGAGCCTGAGGAGACACGTCAAACTGAAGCTGGATGCAACAAATCACTTCTTGTTAATGCTGAACCCAAGATAGAAGTAAAACAGGGCCTCCATGGTGAAGTTTTAAATGTAGATGAACTATCAAAAGCCATCAATCTGTCTCCTAATACTCAGAGAACAGGGAAAGATGATAGTACTAGTTTTGAATGTCAGCTAAATGCTTCTCCAAAGGTGAGGAGTACAAAAGAAAGCAAACCTACCAAGGACAGATTGAAGTCTCAGATCAATGGTACTCAGGTTCAGAGAAATATTTCCAATCAGGCATCTAAAGATTCTGCAAAAATTCCAAGTAGAAGGGGAAGAGAGAGTCCACAGAGGACAAAAGTAGAAAAGCTGTCGGCACACACCACCATTTCAACTACTCATTCAACATGCAGAACTCTAAAATCAGAGGATTCTGAGTGTTCTTCAAAGGCAAAAATCATTCAAGAGAATAGAAGCAATGAAAGGGAATTAAGGACAAAGAAAGGAATTGAAACCCAAACTTCTGCATCAGAGAAGGTTGAACCAGGAGGACGTCAAACATCATACAGGCCCAAGCGAAATGTTAATTTGAGTAAAGCAGATATGAAATCAAATCCTGCGGTTTTCAATTTCAGAAGTGATGAACGAGCAGAGAGGAGGAAAGAGTTTTTTATGAAGTTGGAGAAAAAAATGCATGCTAAGGAGGCTGAGATGAACCAGATTCAAGCAAAGACACAGGAGAAGACAGAAGCTGAGATTAGACAATTTCGGAGAAGTCTCAACTTTAAAGCAACGCCAATGCCATCTTTCTATCATGATTCTGTATCACCAGCACCAGATGGAAACAATGCTGTCTCAATTAACAAATCAACTAAGCGACAGATCAAGTCATCAAGTGCAGGGGGTAGAGCTGCTGCAGGATTCCCATTGTATCCAAATACAGGAATCGACCAAGTAGTATCTGCCAGTGAATCTGTAAACACAACTAATCCACCTCAAGTCACAAAAGCGATCATTCGGACTCCATCAGCCAACAGAAACAGGCCCCACCAAGCTGGGGTGAAAAATGAACTGGCAATGAAGAAAGAGCAAGAGAAGGATGCTAATGGGCAGAAACATAGAGTATCAGAAGTTAGTAAGGTGACAAAAGGGAGGGTTGAGGGAAAGCATAATGCAGGAGCTGGGAGAAGCAGCACTGGTATTGTAAGGAAAAATATGAAAGACATTGGCATCACTGTTTCAGGTATGCGTCATCTAGCAGTTGGTGTTGCATGGTGA 1782 41.36 MAGEIEEPFSLNFQADSLHSGSISFGRFETESLSWERRSSFSHNRYLEEVEKYSKPGSVTEKKAYFEAHFKKRALLSQSLSECQTGTEYQTSENDVMENIGYREDFEHEEGIHFANFDGSPGGSGHHGDCEVTECERQDTVISHSEFHVELAFNNTNVVEDNVFKQVEPEETRQTEAGCNKSLLVNAEPKIEVKQGLHGEVLNVDELSKAINLSPNTQRTGKDDSTSFECQLNASPKVRSTKESKPTKDRLKSQINGTQVQRNISNQASKDSAKIPSRRGRESPQRTKVEKLSAHTTISTTHSTCRTLKSEDSECSSKAKIIQENRSNERELRTKKGIETQTSASEKVEPGGRQTSYRPKRNVNLSKADMKSNPAVFNFRSDERAERRKEFFMKLEKKMHAKEAEMNQIQAKTQEKTEAEIRQFRRSLNFKATPMPSFYHDSVSPAPDGNNAVSINKSTKRQIKSSSAGGRAAAGFPLYPNTGIDQVVSASESVNTTNPPQVTKAIIRTPSANRNRPHQAGVKNELAMKKEQEKDANGQKHRVSEVSKVTKGRVEGKHNAGAGRSSTGIVRKNMKDIGITVSGMRHLAVGVAW* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4447383 4454698 - Vvi1g418 Vvi1g418 769618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g418 593 MobiDBLite consensus disorder prediction 324 359 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 531 566 - -
Vvi1g418 593 Pfam Targeting protein for Xklp2 (TPX2) domain 377 445 IPR027329 -
Vvi1g418 593 MobiDBLite consensus disorder prediction 251 273 - -
Vvi1g418 593 PANTHER PROTEIN WVD2-LIKE 7 22 592 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 324 342 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 235 305 - -
Vvi1g418 593 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 22 592 IPR044216 -
Vvi1g418 593 Coils Coil 392 422 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 531 558 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 290 305 - -
Vvi1g418 593 MobiDBLite consensus disorder prediction 274 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g418 - - - vvi:100245710 1163.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34