Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g42 ATGAGAAGAACAACCCATAAACTTCTCATAACACTCTTCAATCAACTCAATGTTCGTCCTTTAACCACGCTCCCTCAACTCCCCCAACCCACCTCTATAGTTAACCCAAACCACCTGCTCCGAGTCTGCACTGTCCTCTACCAACAGCAGAACTCACCCGAAGTCAGACTCCAAACCCATCTCCGGGCCTGCGAGTTCCACCTCACCCACGAGTTCTTCCTCCAAGTCTGCAACAAATTCCCACTTTCATGGCGACCCGTTTACAAGTTCTTCGAGTTCACCGAAACCCAACCCTGTTTCCATCACAATTCAGTTACTTTCAACAAGATGGTCGACGTGATTGGACGATCCAGAAACATCAAACTTTTCTGGGAGGTTCTGCAGGAGATGGGACGGCGTCGTCTTGCCAATGATAAGACGTTTGTGATTGCTTTGAAGACGTTGGCTTCGATCAGAGAGATGAAGAAGTGCGTGGAGTTTTTTCATTTGATGAATGCCCACGAATATGGTTATAGTTTGGAGACTTTGAATAAGGTGGTTGAGGTTCTGTGTAGGAGTAAGCTTGCGGTTGAAGCTAAAGAAATTGTTTTGAAGTTGAAAACTTGGATTCCGCCAAGTGGGGTTACGTATGGGTATTTGATTAAGGGTTTTTGTGAGGTTGGCGATTTGATTGAGGCGGCAAACGTTTGGGATTTGATGGTGGATGAAGGGTTTCGGCCGGGCATTGACGCGGTGGAGAAGATGATGGAGACCCTTTTCAACATTAATAGGTTTGATGAAGCAATGAAGCTTTTTCAGGCAGTGAGAACAACAAGGTTTGATGAGTTGGTTCTTTCTACTTACAGTCTTGTGATCGATTGGATGTGTAAAAGAGGCAAGGTCTCGCAAGCCTATATGGTGTTTGAAGAAATGCTCAAGAGAGGGATTCAACCTGATAATAAGACAATGTCCTCATTAATTTATGGGCTTCTGGCAAAAGGGAGAGTTAGAGAGGCTAATAAGATTACGGAAGGTATTGAAAGGCCGGATATAGCTGTGTATCATGGAGTGATTAAGGGGCTTCTGAGGTTGAGAAAGGCAGGTGAAGCTACACAAGTGTTTCGGGAGATGATAAGGAGGGGGTGTGAGCCTACAATGCATACCTATATTATGCTATTGCAAGGGCATTTAGGGAAGAAAGGGAGGAAAGGGCCACACCCACTTGTGAATTTTGATAGTATTTTTGTAGGGGGTTTGATTAAGGTGGGGAAGTCATTAGACGCCAGTAAGTATGTGGAGAGAATGATGGATGGGGGAATGGAAGTACCCAGGTTTGACTACAACAGATTTCTGCATTGTTATTCAAATGAGGAAGGTGTATTTATGTTTGAGGAGGTTGGGAAGAAGTTGAGAGAGGTTGGGTTGGTTGACTTAGCAGATATATTCTTGAGGTATGGGGAAAAAATGGCTACTAGAGATAGGAGAAGAAATAGAGTAGCTGAACCTTTAGAAGAGCTTCTAAGGTCCCAATTTCAAAATGGGGCAAATGGGATCTCAGGAACTGATCAAATACAACAAGAAAGGGCAAGTTGA 1572 44.08 MRRTTHKLLITLFNQLNVRPLTTLPQLPQPTSIVNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFFEFTETQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASIREMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGYLIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTTRFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQGHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEPLEELLRSQFQNGANGISGTDQIQQERAS* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 498866 500438 - Vvi1g42 Vvi1g42 769242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Vvi1g42 523 Pfam PPR repeat family 342 388 IPR002885 -
Vvi1g42 523 Pfam PPR repeat family 280 323 IPR002885 -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 339 465 IPR011990 GO:0005515
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 69 167 IPR011990 GO:0005515
Vvi1g42 523 Pfam PPR repeat 208 238 IPR002885 -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 175 273 IPR011990 GO:0005515
Vvi1g42 523 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 494 - -
Vvi1g42 523 PANTHER OS07G0599201 PROTEIN 8 494 - -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 275 338 IPR011990 GO:0005515
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g42 - - - vvi:100259407 1045.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g42 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008668 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 1 1 3 1 1 34