Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g42 ATGAGAAGAACAACCCATAAACTTCTCATAACACTCTTCAATCAACTCAATGTTCGTCCTTTAACCACGCTCCCTCAACTCCCCCAACCCACCTCTATAGTTAACCCAAACCACCTGCTCCGAGTCTGCACTGTCCTCTACCAACAGCAGAACTCACCCGAAGTCAGACTCCAAACCCATCTCCGGGCCTGCGAGTTCCACCTCACCCACGAGTTCTTCCTCCAAGTCTGCAACAAATTCCCACTTTCATGGCGACCCGTTTACAAGTTCTTCGAGTTCACCGAAACCCAACCCTGTTTCCATCACAATTCAGTTACTTTCAACAAGATGGTCGACGTGATTGGACGATCCAGAAACATCAAACTTTTCTGGGAGGTTCTGCAGGAGATGGGACGGCGTCGTCTTGCCAATGATAAGACGTTTGTGATTGCTTTGAAGACGTTGGCTTCGATCAGAGAGATGAAGAAGTGCGTGGAGTTTTTTCATTTGATGAATGCCCACGAATATGGTTATAGTTTGGAGACTTTGAATAAGGTGGTTGAGGTTCTGTGTAGGAGTAAGCTTGCGGTTGAAGCTAAAGAAATTGTTTTGAAGTTGAAAACTTGGATTCCGCCAAGTGGGGTTACGTATGGGTATTTGATTAAGGGTTTTTGTGAGGTTGGCGATTTGATTGAGGCGGCAAACGTTTGGGATTTGATGGTGGATGAAGGGTTTCGGCCGGGCATTGACGCGGTGGAGAAGATGATGGAGACCCTTTTCAACATTAATAGGTTTGATGAAGCAATGAAGCTTTTTCAGGCAGTGAGAACAACAAGGTTTGATGAGTTGGTTCTTTCTACTTACAGTCTTGTGATCGATTGGATGTGTAAAAGAGGCAAGGTCTCGCAAGCCTATATGGTGTTTGAAGAAATGCTCAAGAGAGGGATTCAACCTGATAATAAGACAATGTCCTCATTAATTTATGGGCTTCTGGCAAAAGGGAGAGTTAGAGAGGCTAATAAGATTACGGAAGGTATTGAAAGGCCGGATATAGCTGTGTATCATGGAGTGATTAAGGGGCTTCTGAGGTTGAGAAAGGCAGGTGAAGCTACACAAGTGTTTCGGGAGATGATAAGGAGGGGGTGTGAGCCTACAATGCATACCTATATTATGCTATTGCAAGGGCATTTAGGGAAGAAAGGGAGGAAAGGGCCACACCCACTTGTGAATTTTGATAGTATTTTTGTAGGGGGTTTGATTAAGGTGGGGAAGTCATTAGACGCCAGTAAGTATGTGGAGAGAATGATGGATGGGGGAATGGAAGTACCCAGGTTTGACTACAACAGATTTCTGCATTGTTATTCAAATGAGGAAGGTGTATTTATGTTTGAGGAGGTTGGGAAGAAGTTGAGAGAGGTTGGGTTGGTTGACTTAGCAGATATATTCTTGAGGTATGGGGAAAAAATGGCTACTAGAGATAGGAGAAGAAATAGAGTAGCTGAACCTTTAGAAGAGCTTCTAAGGTCCCAATTTCAAAATGGGGCAAATGGGATCTCAGGAACTGATCAAATACAACAAGAAAGGGCAAGTTGA 1572 44.08 MRRTTHKLLITLFNQLNVRPLTTLPQLPQPTSIVNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFFEFTETQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASIREMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGYLIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTTRFDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLLAKGRVREANKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQGHLGKKGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCYSNEEGVFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEPLEELLRSQFQNGANGISGTDQIQQERAS* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 498866 500438 - Vvi1g42 Vvi1g42 769242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Vvi1g42 523 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Vvi1g42 523 Pfam PPR repeat family 342 388 IPR002885 -
Vvi1g42 523 Pfam PPR repeat family 280 323 IPR002885 -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 339 465 IPR011990 GO:0005515
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 69 167 IPR011990 GO:0005515
Vvi1g42 523 Pfam PPR repeat 208 238 IPR002885 -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 175 273 IPR011990 GO:0005515
Vvi1g42 523 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 494 - -
Vvi1g42 523 PANTHER OS07G0599201 PROTEIN 8 494 - -
Vvi1g42 523 Gene3D Tetratricopeptide repeat domain 275 338 IPR011990 GO:0005515
Vvi1g42 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g42 - - vvi:100259407 1045.42