Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g421 ATGGATGTTATACCTATGCGGTCTTCCAGCTTGGAGCTAACCATATCCGTACCTGGATTCACTTCATCTCCTTCTCTTCCTTCATCGGCAGGAGAAGGGGTTTGTGGGGTGAGAGATTTGGACATAAACCAAGTACCGTTGGGAGCAGAAGAAGAATGGACGACTGGAAGCATGGAAGACGAAGAGGAGAGTGGAAATGGAGGTCCTCCTCGCAAGAAACTTCGACTCTCAAAGGACCAGTCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACCTTAAACCCTAAACAGAAAGAGGCTTTGGCAATGCAATTGAAGCTCAGACCAAGACAAGTTGAGGTCTGGTTTCAAAACCGTAGAGCCAGGAGCAAGCTGAAGCAGACTGAGATGGAATGTGAATACTTGAAGAGATGGTTCGGGTCACTGACGGAGCAGAACAGGAGGCTACAGAGGGAAGTGGAGGAGCTGAGGGCCATGAAGGTTGCCCCGCCAACCGTCATCTCACCCCACAGCTGCGAGCCTCTTCCCGCTTCCACGCTCACTATGTGCCCTCGCTGCGAGCGCGTCACCACCACCTCACTCGGCAAGGACCCCACCAATCGCACCACCTCGCCCACCCTGTCCTCCAAACTCCCCACCGCCCTCCATTCCCGACACTCTTCGGCGGCTTGCTGA 678 53.69 MDVIPMRSSSLELTISVPGFTSSPSLPSSAGEGVCGVRDLDINQVPLGAEEEWTTGSMEDEEESGNGGPPRKKLRLSKDQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVAPPTVISPHSCEPLPASTLTMCPRCERVTTTSLGKDPTNRTTSPTLSSKLPTALHSRHSSAAC* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4488300 4491290 - Vvi1g421 Vvi1g421 769621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g421 225 SUPERFAMILY Homeodomain-like 60 128 IPR009057 -
Vvi1g421 225 Gene3D - 63 134 - -
Vvi1g421 225 PANTHER - 1 208 - -
Vvi1g421 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 208 - -
Vvi1g421 225 CDD homeodomain 70 128 IPR001356 GO:0003677
Vvi1g421 225 SMART HOX_1 69 131 IPR001356 GO:0003677
Vvi1g421 225 Coils Coil 140 163 - -
Vvi1g421 225 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Vvi1g421 225 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Vvi1g421 225 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Vvi1g421 225 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
Vvi1g421 225 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Vvi1g421 225 MobiDBLite consensus disorder prediction 49 75 - -
Vvi1g421 225 MobiDBLite consensus disorder prediction 192 225 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14509 PF00046 Homeodomain 6.10E-17 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g421 K09338 - vvi:100257750 451.055