Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g422 ATGGCATTGGCAGTCTCAGTTGTGCGATCTTGTGGCATGTGTTGCAGTGAGAAACCCTTGAGAATTGCAATAGCATTTGAAGCTGAGAGAGGATATCAAAATGCTTTGGGTAGAAAAATGAGGTTCAGCAATTTTCTCCTTTCCAAAATTTCAAAATTATGCTCCCGATCAAAGCACAAATTTCCAGAAAAACTCTTGGATGAAGTAGATAGTTATGGCAAGGCGAGCATCTCAGATCGGTCAAAGTTGCTTAATAAGGTATCAGTTTTGATGGGTTATGATAGTTTGCATGATCTAATTGAGAATGAGAGAGTTCAAAAGGAATCTGATATGAATCTAAAAGATGAAATCAATAATGTTGATATCTCGTTGGCATGTAGAAAATTTCCATCCATCATCTTGGGTAATTCTCCACCGGTGGAATTGTATGATGAGAATAAATGTCATAGTGATGTGAGGAGCCTTTTAGCAGCTCAAATCTGTGAAGAATTTCTCTCCAGTTCAGGTGCTGAGAAGTGGGATGGTCCAGATAGGTTTTCTGAAACATGGCCTTCTTTATGTCCCACCCTTCCAAATATTAATGCTTCATTATTAAGAAAAGAAAAAAAGTCAGATGTCTTAGTCACAGTGGAGGGCCCCCCTGCTAATATGGTGCTTGAATCACAAAATAATGCTGAACCAGTTGAGTTGATTCTTGATAAATCTATCAGTTTCATACCAGGATTACAAAAGAGGCACTGTCGTCAACTGGAAAATTGTGGCTTTCACACGTTGCGGAAATTGCTACAGCATTTTCCTCGGACGTACGCTGATCTAAAAAATGCACTGATTGGAATTGATGATGGGCAATATATGATCTCCATCGGAAAAATCTTATCTTCCAGGGGGGTTAAAGCCAGTTGTTCTTTTTCGTTTCTTGAGGTAGTTGTGGGTTGTGAGATTGCAGACTGTGAATCAAAGTATGAGCAGATGATTGGTGCTAATGATAGTTGGGGAAAGAAAACAATTTATTTGCATTTGAAAAAATTTTTCCGCGGCACTCGTTTTACAAATGTGCCTTTTCTTAGATGTCTTCAAGAGAAGCATAAAGAAGGGGATATTGTATGTGTCAGTGGTAAGGTGAGGACTATGCGTACAAAAGACCATTATGAAATGAGAGAATATAATTTGGATTTGATTGAAGATGATCAAGATTCATCTGTTTGTCCCAAAGGGAGGCCATACTCTATATACCCTTCAAAAGGCGGTTTGAATTCAAATTTTCTTAGGGACATTATTTCAAGAGCTTTACACAGTTTGCCTGTCAATATTGATCCTATTCCTAAAGATATTATTGAGGACTTCGGGCTATTATCCCTTCACAGTGCTTATGTGGGGATTCACCAGCCAAAGGATTTAAAAGAGGCTGATTTAGCTCGCAAAAGGTTGATATTTGATGAGTTCTTTTATCTTCAGCTAGGGCGCTTATTCCAAATCCTTGAAGGTCTTGGTACAAAAATAGAGAAGGATGGATTGCTGGATAAGTACAGAAAACCTGAATTGAATACTGTTTTTGTTGAGGAATGGTCCAGTCTCACCAAGAATTTCTTGAAGGCTCTTCCATATTCCCTCACTTCAAGTCAGCTCAGCGCTGCTTCAGAAATTATCTGGGATCTAAAGCGACCAGTCCCTATGAATCGACTTTTACAGGGTGATGTTGGATGTGGGAAAACTGTGGTAGCTTTTCTGGCATGTATGGAGGTTATTGGTTCAGGTTATCAGGCAGCTTTCATGGTTCCAACTGAGCTGCTTGCTCTCCAACATTATGAGCAACTCATCAATTTGCTGGAGAATATGGAGGGGGCTGAGTGCAAACCTTCTATTGCTTTACTCACAGGTTCAACACCATCAAAGCAATCGCGGATGACTCATAAGGGTCTTCAAAATGGAGACATCTCATTGGTCATTGGAACCCACAGTTTAATATCTGAAAAAGTGGAATTCTCTGCTTTACGCATTGCTGTGGTGGATGAACAACATCGTTTTGGTGTGATCCAAAGAGGAAGGTTTAACAGTAAGTTATATTATAATTCTATTAGTTCAAGAATGGCCGAGGCTAGTTCAGATGTGTTGTCAGAAGGAGATACACGTATGGCTCCTCATATTCTTGCAATGTCAGCTACTCCTATACCAAGGACACTTGCTCTTGCTTTATATGGAGACATGTCCCTGACACAAATAACCGATTTACCTCCTGGGAGAACACCAGTTGAAACATACACTATTGAAGGATGCGATGCTGGCTTTGAGGATGTCTACCAGATGATGTTGGATGAGCTAGAAGTAGGGGGGAAAATTTATATTGTATATCCAGTCATTGAACAATCTGAACAACTGCCTCAGCTTCGTGCTGCCTCTACAGATCTTGAAACTATATCTAGTAGGTTTCAGGGTTACAAATGTGGTTTGTTACATGGGAGAATGAAAAGTGATGAGAAAGATGAAGCATTGAGACGATTTAGGTCTGGAGAAACAAATATCCTGCTTTCTACCCAAGTAATTGAGATTGGTGTTGATGTTCCAGATGCATCTATGATGGTTGTTATGAATGCTGAGAGATTTGGGATAGCTCAGCTACACCAACTCAGAGGACGAGTTGGACGTGGAGTGAGGAAGTCTAAATGTTTATTAGTATCATCTACAGCTAGTGGCCTAAATCGATTGAAGGTGCTGGAAAACTCATCTGATGGTTTTTACCTAGCAAATATGGACCTCCTTTTGCGTGGACCTGGAGACTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGAAAATTTTAGGCACTTCTCATGATTTGGAGCAATTCCCGGAGCTCAAAGCTGAGCTTAGCATGCGGCAACCGCTTTGTCTTCTGGGTGATTGA 2967 40.28 MALAVSVVRSCGMCCSEKPLRIAIAFEAERGYQNALGRKMRFSNFLLSKISKLCSRSKHKFPEKLLDEVDSYGKASISDRSKLLNKVSVLMGYDSLHDLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLAAQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKEKKSDVLVTVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFHTLRKLLQHFPRTYADLKNALIGIDDGQYMISIGKILSSRGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQPKDLKEADLARKRLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDLEQFPELKAELSMRQPLCLLGD* 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4493672 4545871 - Vvi1g422 Vvi1g422 769622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g422 988 CDD DEXHc_RecG 476 744 - -
Vvi1g422 988 TIGRFAM recG: ATP-dependent DNA helicase RecG 253 956 IPR004609 GO:0003678|GO:0006281|GO:0006310
Vvi1g422 988 Pfam Helicase conserved C-terminal domain 766 882 IPR001650 -
Vvi1g422 988 Gene3D - 498 741 IPR027417 -
Vvi1g422 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 744 IPR027417 -
Vvi1g422 988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 551 740 IPR014001 -
Vvi1g422 988 SMART helicmild6 800 883 IPR001650 -
Vvi1g422 988 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 908 966 IPR045562 -
Vvi1g422 988 Gene3D - 750 921 IPR027417 -
Vvi1g422 988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 764 919 IPR001650 -
Vvi1g422 988 SUPERFAMILY Nucleic acid-binding proteins 231 434 IPR012340 -
Vvi1g422 988 Pfam DEAD/DEAH box helicase 560 725 IPR011545 GO:0003676|GO:0005524
Vvi1g422 988 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 13 988 - -
Vvi1g422 988 SMART ultradead3 533 756 IPR014001 -
Vvi1g422 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 937 IPR027417 -
Vvi1g422 988 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 13 988 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g422 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - vvi:100252614 1926.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37