Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g424 ATGGAGTCAACAACGTCCAACTTGATCAAGCTCCTCCTCCTCCTCCTCTATTTCCTTCCCTGCTTTCATACCAAATCACCACCCGCTTCAACACTTCCTCTTCCCACAAAATCTGGCTACCTCCCTGTCAATCCCACAACCAATTCAGCCATGTTCTACACTTTCTATGAAGCACAGAACCCCATATCACCTCTCACCCAAACCCCACTTGTGATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATCGGTAACTTCCTTGAGCTTGGCCCTTGGCGCCTGAATCGTGACAAACACCTTCAACTTGAACCCAATTTGGGTGCATGGAACCGCATATTTGGCCTACTTTTTCTTGATAATCCGGTAGGAACGGGATTCAGTGTTGCTTCTTCACCTAAAGAAATCCCAACAGATCAATATTCTGTTGCCAAGCATCTATTCTTTGCCATAAGGTCATTTATTGAATTAGACCCATTATTCAAATCACGCTCAATTTATATTACAGGGGAGAGCTATGCAGGAAAGTATGTTCCAGCAATTGGGTACCACATTTTGAAGAAAAACTCACGGTTACCAGAGTCTCAGCGTGTGAATTTAAGGGGTGTTGCTATAGGGAATGGGCTGACAGACCCAGTGAGACAAGTGGCTACTCATGCTGCGACTACACTATATGATCTTACAAGGAAAGTTCCTTATGAATTGGAATTGGTTGGTGACCATGTTGTGGTTTCAGGGGCTGGACACCTTGTGCCTGCTGACCAGCCAGTGAATTCTCAGATCATGATAGAAGATTGGGTTTTGGAGAGGGGATTGTTTGGCAATGAGCAAGAGAGAAATTAA 843 45.43 MESTTSNLIKLLLLLLYFLPCFHTKSPPASTLPLPTKSGYLPVNPTTNSAMFYTFYEAQNPISPLTQTPLVIWLQGGPGCSSMIGNFLELGPWRLNRDKHLQLEPNLGAWNRIFGLLFLDNPVGTGFSVASSPKEIPTDQYSVAKHLFFAIRSFIELDPLFKSRSIYITGESYAGKYVPAIGYHILKKNSRLPESQRVNLRGVAIGNGLTDPVRQVATHAATTLYDLTRKVPYELELVGDHVVVSGAGHLVPADQPVNSQIMIEDWVLERGLFGNEQERN* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4557701 4559021 + Vvi1g424 Vvi1g424 769624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g424 280 Gene3D alpha/beta hydrolase 23 231 IPR029058 -
Vvi1g424 280 PANTHER CARBOXYPEPTIDASE 27 225 - -
Vvi1g424 280 ProSitePatterns Serine carboxypeptidases, serine active site. 168 175 IPR018202 GO:0004185
Vvi1g424 280 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 225 IPR001563 GO:0004185|GO:0006508
Vvi1g424 280 SUPERFAMILY alpha/beta-Hydrolases 31 224 IPR029058 -
Vvi1g424 280 Pfam Serine carboxypeptidase 31 224 IPR001563 GO:0004185|GO:0006508
Vvi1g424 280 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vvi1g424 280 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vvi1g424 280 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g424 K09645 CPVL; vitellogenic carboxypeptidase-like protein [EC:3.4.16.-] - vvi:100247506 446.817
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g424 . . . . . . . . . . . . . . Sed06g0201 . . Bhi07g00299 Tan04g1602 Cmetu10g0245 . Hepe01g0476 . . . . . . . . . . . . . Lsi04g01160 . . Cme10g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31