Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g425 ATGTGGTGTTATAGGATAAAAAGTAGGAATATTGATCTCCTTGTCGGTGGGTATATATTATTTCTATTAAGTCTCAACTACTTGAAATTGAATCAAGGCAAGCATTTAAGAATTGTCATGGCGATGGAGTCAATAACGTCCAACTTGATCAAGCTCCTCCTCCTCCTCCTCCTCTATTTCCTTCCCTGCTTTCATGCCAAATCACCGCCCACTTCAACGCTTCCTCTTCCCACAAAATCTGGCTACCTCCCTGTCAATCCCACCACCAATTCAGCCATGTTCTACACCTTCTATGATGCACAGAACCCCATATCACCTCTCACCCAAACCCCACTTGTGATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATCGGTAACTTCCTTGAGCTTGGCCCTTGGCGCCTGAATTGTGACAAACACCTTCAACTTGAACCCAATTTGGGTGCATGGAACCGCATATTTGGCCTACTTTTTCTTGACAATCCGATAGGAACGGGATTCAGTATTGCTTCATCACCTAAAGAAATTCCAACAGATCAATATTCTGTTGCCAAGCATCTGTTCTTTGCCATAAGGTCATTTATTGAATTAGACCCATTATTTAAATCACGCTCAATTTATATTACAGGGGAGAGCTATGCAGGAAAGTATGTTCCTGCAATTGGGTATTACATTTTAAAGAAAAATGCACAGTTACAAGTGGCTACTCATGCTGCGAGTGCTTATTTTTCAGGATTGATCAATGGGAAACAGAAAACCCAGCTGGAAAAAGCTCAGTTGGAGGCCGTAAACCATGTTGTGGTTTCAGGGGCTGGGCACCTTGTGCCTGCTGACCAGTCGGTGAATTCTCAGATAATGATTGAAGACTGGGTTTTGGAGAGGGGATTGTTTGCCAATGAGCAAGAGGCTAATCCATCTAGTTCTTCAACTGGTAATGAAACAAAAAACCTCAGTGAGAGAGCTCAATTTGAGGTTATCAGGCTGACTGAGGGGAATTGGAGAGAGGCAACAAATCCTAGATACAGGGCAATGTATTCTCAAGCAATGATCGAAGTTTGGGTTCTAGAGAGGGGACTGTTTGCCAATGAGCAAGAGAGCAATTATTCTTGTTTTTTGTTTTGTTTTTTTGGTACTAGTTCTTGTATGACCAATTAG 1161 42.89 MWCYRIKSRNIDLLVGGYILFLLSLNYLKLNQGKHLRIVMAMESITSNLIKLLLLLLLYFLPCFHAKSPPTSTLPLPTKSGYLPVNPTTNSAMFYTFYDAQNPISPLTQTPLVIWLQGGPGCSSMIGNFLELGPWRLNCDKHLQLEPNLGAWNRIFGLLFLDNPIGTGFSIASSPKEIPTDQYSVAKHLFFAIRSFIELDPLFKSRSIYITGESYAGKYVPAIGYYILKKNAQLQVATHAASAYFSGLINGKQKTQLEKAQLEAVNHVVVSGAGHLVPADQSVNSQIMIEDWVLERGLFANEQEANPSSSSTGNETKNLSERAQFEVIRLTEGNWREATNPRYRAMYSQAMIEVWVLERGLFANEQESNYSCFLFCFFGTSSCMTN* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4559806 4564709 + Vvi1g425 Vvi1g425 769625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g425 386 Pfam Serine carboxypeptidase 73 236 IPR001563 GO:0004185|GO:0006508
Vvi1g425 386 ProSitePatterns Serine carboxypeptidases, histidine active site. 265 282 IPR033124 GO:0004185
Vvi1g425 386 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 160 IPR001563 GO:0004185|GO:0006508
Vvi1g425 386 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 171 IPR001563 GO:0004185|GO:0006508
Vvi1g425 386 PRINTS Carboxypeptidase C serine protease (S10) family signature 196 221 IPR001563 GO:0004185|GO:0006508
Vvi1g425 386 PANTHER CARBOXYPEPTIDASE 69 259 - -
Vvi1g425 386 ProSitePatterns Serine carboxypeptidases, serine active site. 210 217 IPR018202 GO:0004185
Vvi1g425 386 Gene3D alpha/beta hydrolase 65 256 IPR029058 -
Vvi1g425 386 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 69 259 IPR001563 GO:0004185|GO:0006508
Vvi1g425 386 SUPERFAMILY alpha/beta-Hydrolases 72 262 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g425 K09645 CPVL; vitellogenic carboxypeptidase-like protein [EC:3.4.16.-] - vvi:100257846 423.705
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g425 . . . . . . . . . . . . . . . . . Bhi07g00300 . . Lac13g1488 . . . Cla07g00633 Cam07g0653 Cec07g0712 Cco07g0712 Clacu07g0653 Cmu07g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31