Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g426 ATGGGCGGAGGAGTAGGAGGTGGAGGGGCTATAGTCGATGGCTTTCGCCGCTGGTTCCAACGTCGCTCCTCTCGTTTCAATCATAACAATAACAATAACAATGATAATAATAAATATACTGAAAAGATTCAAAACACCAGAAACGACCAAGTTTTGCTCAGCGATGACGGCGTAGACTCCACAAGTGAGGAAGTAGGACAACATCAAGAAGATCGGGTGCGGTTGAAGCTCATCAAAGTCCCCAAGCGAACCAATCACAGACTGACATCCATGGATTCTCACAGGAAGAGCATGCTTGACAAAGAATTCTTCACAGAATATGGTGAGGCAACTCAATATGAAATCCAAGAGGTAGTTGGCAAAGGAAGCTATGGCGTTGTTGCATCTGCAGTTAATACTCACACTGGAGAGAGGGTAGCTATAAAGAAGATCAATGATGTTTTTGAAAATGTTTCCGATGCCACCCGCATTCTAAGAGAAATTAAGCTCCTTCGGCTGCTTAGGCATCCTGATATTGTACAAATAAAGCATATAATGCTTCCTCCATCTCGAAGAGAATTTAAAGATATTTATGTTGTTTTTGAGTTGATGGAATCTGACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGCAAATGTGTTTCATAGAGATTTAAAGCCAAAAAACATCCTTGCTAATGCAGACTGCAAACTGAAGATTTGTGATTTTGGGCTTGCTCGCGTGTCATTTAATGATACCCCATCAACTATCTTTTGGACTGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAATACACCCCTGCTATTGATATTTGGAGCATAGGATGTATATTTGCGGAAATGCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGATTCGAAATGAAAAGGCTAAAAGATATCTGAATAACATGAGAAAAAAATCACCAATTCCTTTCTCGCAGAAATTCCCCAATGCAGATCCATTGGCTGTTCGCTTGCTGGAGCGTTTGCTTGCATTTGATCCTAAAAATCGACCATCTGCTGAAGAGATAAGATTTACTGATCCATATTTTCATGGTTTAGCAAATGCAGACTATGAGCCATGCACACAACCCATTTCAAAATTTTTGTTTGAATTTGAGAGGAGGAGAATGACAAAAGAAGATGTCAGAGAGCTAATTTATAGAGAGATTTTAGAATATCACCCACAGATGTTGCAGGAGTATCTTCAGGGCACTGATTTGACTAGCTTCATGTATCCAAGTGGAGTTGATCGATTTAAGCAACAATTTGCCCATCTTGAGGAACATCATGGTAAAGGTGAAAGAACTGCGCCACGCCTGAGGCAGCATGCCTCCTTGCCTAGGGAGCGGGTCTGTGCTCCCATAGATGACCCTGTTAGCCAAACTAATGATTTTGAAAAGCGTACTGCTGCTTCTGTTGGTCGCACAACACTTCAGAGCCCTCCAAGGTTTCAGGCAATCAATGTATCAGAATCTGCAAACAAGAAGGTAACCACCATGCAGAATGGGGCTAATAAACCAAACTATAGTGCTTGTAGCTTGATGAAGAGTCCCAGCATTAGTGCTTCTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAGGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAAAGGTAGCAGCATTGTATGCCTGA 1842 41.69 MGGGVGGGGAIVDGFRRWFQRRSSRFNHNNNNNNDNNKYTEKIQNTRNDQVLLSDDGVDSTSEEVGQHQEDRVRLKLIKVPKRTNHRLTSMDSHRKSMLDKEFFTEYGEATQYEIQEVVGKGSYGVVASAVNTHTGERVAIKKINDVFENVSDATRILREIKLLRLLRHPDIVQIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDTPSTIFWTDYVATRWYRAPELCGCFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVQQLDLMTDLLGTPSYESIARIRNEKAKRYLNNMRKKSPIPFSQKFPNADPLAVRLLERLLAFDPKNRPSAEEIRFTDPYFHGLANADYEPCTQPISKFLFEFERRRMTKEDVRELIYREILEYHPQMLQEYLQGTDLTSFMYPSGVDRFKQQFAHLEEHHGKGERTAPRLRQHASLPRERVCAPIDDPVSQTNDFEKRTAASVGRTTLQSPPRFQAINVSESANKKVTTMQNGANKPNYSACSLMKSPSISASKCMEVKERDCEDEAIPEQNAEAAERLSQKVAALYA* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4565333 4574753 - Vvi1g426 Vvi1g426 769626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g426 613 MobiDBLite consensus disorder prediction 24 47 - -
Vvi1g426 613 Gene3D Transferase(Phosphotransferase) domain 1 199 428 - -
Vvi1g426 613 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 77 551 - -
Vvi1g426 613 Pfam Protein kinase domain 113 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g426 613 Coils Coil 29 49 - -
Vvi1g426 613 Gene3D Phosphorylase Kinase; domain 1 129 451 - -
Vvi1g426 613 ProSiteProfiles Protein kinase domain profile. 113 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g426 613 SMART serkin_6 113 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g426 613 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 77 551 - -
Vvi1g426 613 SUPERFAMILY Protein kinase-like (PK-like) 110 409 IPR011009 -
Vvi1g426 613 ProSitePatterns Protein kinases ATP-binding region signature. 119 143 IPR017441 GO:0005524
Vvi1g426 613 CDD STKc_TDY_MAPK 112 450 - -
Vvi1g426 613 ProSitePatterns MAP kinase signature. 148 251 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g426 Vvi17g224 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76506 PF00069 Pkinase 1.40E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g426 - - vvi:100252699 1176.39