Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g427 ATGGACAAGTTGAAAAAAGCAGTATTGGGGGCAATGACCTTGGATTCAGCTACGCCATTGTCTGAGGAAACAAAGAAGTGCATCGAAAAGCGTCTTCTCCAGTTATTCCCCGTGATCCGAACCCCTGATCACCCTCCCTACGCTTGGATGATATTGGATGCGATTAAGACATTGAAAGAAAAAAGGGGTTCAAGTGAGAAATCTCTGTCAGAGTTCATTAAATCAAATTATGAAGTGCCTTGGGCTCATTCAAGTTATCTAAGTCACCATCTTTGTAAACTTGCTCAGAATGGTGACATTGTTGTTACATCTGATGATCATTATATGATTCCAACCGGAAACCCTAACCCTAAGCGGAAAGAAAAGCAGCAGAAGCGGAAGCGTCATCAGGGTAGGGGACGCCGTGGTATTTATGATAAGGAAGCAGTGGTTGAAAAAAAAAATCAACTAGGAGAACAAGAGAAAGTGGTGATTAAAGAATTGAGTCAAGCACAAAAACATGAAAATTATGTCATTGATGGAGCAAACGAACAGGATTATCAAGTGAATGAAGGAAAAAATCAATCACAAGGACAACAAAATGAGGTGAGATCCGAGTTACTGCAATCATCATGCCTCAATGATGATAATTGTGCTACTTTGATGGTCATACCTGTTGAATCCTCTAGCCCTAGGGTGGAAGATGAGGGGGAATCTGTAGAGGAGCTGCCAAAGCAACAAAATAGGAGGAAGAGCCCGTTTGATTCATTGCCCCCAGTCAATACTCAGCATCATTTTGAGGAGCAACAGCCACAATCTCAACACCAAGGCATAGCTTCTATACCAGAAGAGGATACAGATGCAGGGGCATTGCTGCCCATAGGTCCTCCTCAGCATACATTGTCCCAGCATCGAGGCCAAGGAAGGCCTCCTGAACCACAACCTGATACAATTACAAGAGATGAAGCATTGTTGCCTTTGCAGCATGAGTCTTATCAACAGCACCCACCACAGAATCGAGGGCGAGGGAGACCTCGTAAGCTAAAACGAGACGCAGAGATTACGGTTAGGGATTTTTCATCCTCTCAGAATCTACGACGAGGAAGACCTCGAAAGCCAAAACAAGATGCAGAGACTATGATGGGGGGTTTTTCAACCTCTCAGAATCTAAGACGATCTAAACGAAAGCCTCATTTTGACACAACGATGGAGAATCATTGTCCCCTCATAACTGTGCAGCAGCAACCAAAGCACATCCATATTGGGGAAGTCCTTCAAAACCTTGATTGA 1269 43.81 MDKLKKAVLGAMTLDSATPLSEETKKCIEKRLLQLFPVIRTPDHPPYAWMILDAIKTLKEKRGSSEKSLSEFIKSNYEVPWAHSSYLSHHLCKLAQNGDIVVTSDDHYMIPTGNPNPKRKEKQQKRKRHQGRGRRGIYDKEAVVEKKNQLGEQEKVVIKELSQAQKHENYVIDGANEQDYQVNEGKNQSQGQQNEVRSELLQSSCLNDDNCATLMVIPVESSSPRVEDEGESVEELPKQQNRRKSPFDSLPPVNTQHHFEEQQPQSQHQGIASIPEEDTDAGALLPIGPPQHTLSQHRGQGRPPEPQPDTITRDEALLPLQHESYQQHPPQNRGRGRPRKLKRDAEITVRDFSSSQNLRRGRPRKPKQDAETMMGGFSTSQNLRRSKRKPHFDTTMENHCPLITVQQQPKHIHIGEVLQNLD* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4583156 4585054 - Vvi1g427 Vvi1g427 769627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g427 422 MobiDBLite consensus disorder prediction 224 242 - -
Vvi1g427 422 MobiDBLite consensus disorder prediction 222 389 - -
Vvi1g427 422 SUPERFAMILY Winged helix DNA-binding domain 40 123 IPR036390 -
Vvi1g427 422 PANTHER HISTONE H1 1 390 - -
Vvi1g427 422 Gene3D - 40 130 IPR036388 -
Vvi1g427 422 MobiDBLite consensus disorder prediction 109 139 - -
Vvi1g427 422 PRINTS AT-hook-like domain signature 297 307 IPR017956 GO:0003677
Vvi1g427 422 PRINTS AT-hook-like domain signature 330 341 IPR017956 GO:0003677
Vvi1g427 422 PRINTS AT-hook-like domain signature 355 365 IPR017956 GO:0003677
Vvi1g427 422 Pfam linker histone H1 and H5 family 44 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g427 422 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g427 422 CDD H15 41 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g427 422 SMART h15plus2 41 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g427 422 PANTHER BNAC09G47260D PROTEIN 1 390 - -
Vvi1g427 422 MobiDBLite consensus disorder prediction 243 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g427 - - - vri:117919324 812.757
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .