Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g429 ATGGATGATGAAGTGGTGCAGAGAGCCTTCCAAGAAGGAGGTCGAGACTACTACCAACAGCAGCCATCCACTTCTTCGTCATCCTCTTCCATTCTCCAATCCCTCCCTCTCCATGTGTCTTTTGATCATGGGTATTATTTATTGGTAAAATCCATTCAAGAACTTCGGGAGAAGAAAGATGGTCTCGTGACGGTTGGCATTGGCGGCCCCAGTGGTTCTGGTAAATCAAGCTTAGCAGAGAAGGTAGCATCTGTCATTGGCTGTACTGTTGTATCCATGGAGAACTATCGTGATGGAGTGGATGATGGAAATGATTTGAATTCCATAGATTTTGATGCACTGGTTTCAAATCTTGAGGATTTGATAAGAGGTAAAGATACATTGATCCCAGTGTTTGATTTCCAAGAAAAGAGACGTGTTGATTCAAGAGCCATAAAGAGTGCTTCATCTGGTGTGGTAATAGTTGATGGTACTTACGCTCTACATTCAAGATTGCGATCTTTGCTTGATATTCGGGTTGCAGTGGTTGGTGGTGTTCATTTTAGCCTTCTTTCCAAAGTTCGATATGATATTGGAGATTCTTGTTCTTTGGACTACCTTATTGACAGCATTTTCCCATTATTCAGAAAGCATATTGAGCCAGACCTTCATCATGCTCAGATTAGAATAAATAACAGCTTTGTCTCATCATTTAGAGAAGCAATCTACAAGCTGAAATGCAAAAGTGAGACGCCAAATGGACATTCTGCTTACTCTTTTCACGGAAATGAAGCACAAACAGATAATTTTATAGAGATGTACCTTAGGCCTCCATCAGCAAATGAAGAAGCACGGATAAATGATTGGATTAAAGTGCGGCAATCTGGTATCAGATATTATTTATCACTGGGTGACCAGAGGATCGTTGACAAAAATTACATCATTAGGCCAAAAGCTGAGTTTGAGGTTGGGCGGATGACACTGGGCGGGTTGCTAGCTTTGGGCTACACTGTTGTAGTGAGTTATAAACGGGCATCTACATCAGTCAGTAATGGACATCTTTCCATGTCATTTGAAACTATTGATAGTCTTGGTGAAACATTCATGGTGCTCAGGGGCACAGATAGGAAAACAGTTGGTGCAGAGGTGTTGAGGATGGGTGTCAATGGACCATGGATCACTAAATCGTATCTAGAGTTGATTCTTGAGAGAAAGGGTGTACCACGTCTTAATACACCACCACTCTTGTCCAGTATATCTCCTACCAGTAATCAAGAAAAGGTGGTTGTTGCACCAAAGCCGATTCGTATCACACCAAACCTTGTTACTCGGCTTGAAGATCTATCTCAGCCATGGACGAGGTCCCCAACCAAATCCAAAATGGAACCTGTGCTGGCAACATGGCATTTCATATCACCAGATCCTCTGCATGCTGATAGTTCTGTCACAGATCCTTCATCTTTCAGGGATACCCTGCGTCTTGCTCCAATGCCTGATTCTTATGACTTGGATAGAGGATTGCTTCTCTCCGTTCAAGCAATACAGGCTCTGTTGGAGAATAAAGGTCTTCCGGTCATAGTTGGAATCGGTAATATGGAGATTAATCAACTATTCAAGTTTGTGATAACATATTTTCAATTTTCAGGTAGAGTAGGATCCCACCCAGCAATTCATGGAGGTCCAAGTGGATCTGGAAAAACTAGTTTGGCTCATAAAATGGCAAATATTGTTGGCTGTGAAGTAGTTTCCCTTGAAAGCTATTATAAATCTGAACATGTAAAGGACTTTAAGTGCGATGATTTTAGTTCTCTTGATCTGTCTTTGCTTTCAAAGAATATTGATGATGTAAAAAACTGCCGAAGAACAAAAGTTCCTATATTTGACTTGGAGACTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGGTGATTTTTGAAGGGGTTTATGCTTTGCATCCTGAGATCCGAAAATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTAATTTCTCGTGTTCAAAGGGATAAAAGCAGGGCAAGAAGCTTTATGTCCCAAAATGAAATCATGATGACGGTTTTTCCAATGTTTCAGCAGCACATTGAACCACATCTTGTTCATGCACATCTCAAAATTCGAAATGACTTTGATCCTGTTCTTTCCCCTGAGAGTTCATTATTTGTTTTAAAGAGTAACAAGCAAGTGGCTTATCAAGATATTTTAAAAATTCTTGACCCTGCAAAGTTCTGTAGTTCTGTTCAAAATTTCATTGATATATATTTGAAGCTTCCTGGAACATCTGCTAATGGGTTTCTGACTGAGAGTGATTGCATACGAGTCAGAATTTGCGAGGGCAGATTTGCATTACTGATACGGGAGCCAATTAGAGAAGGGAACTTCATCATTCAACCCAAAGTGGATTTTGATATTAGCATTAGTACAGTCTCTGGCCTCCTTAATCTTGGGTATCAAGCTGTCGCTTATATTGAAGCATCAGCATTCATCTATCAAGATGGAAAGATTCTTATTGAGGTTGATAATCTACAAGATGTCAGCCCTTACCTACAAATCAAAGGGGTTAACAAAGAAGCCGTTGCAGCTGCTGGGTCAACACTCAAGCTGGATGGGTCATATACGACAAAGAGTTATCTTCAAATAATTCTGGAAAGCTTGCCAGCATCTGAAAGAAGTTCCAGCGGCATTCACTCACACCAAGCTGCAAGGTTGCAGGAACTTGTGGAATTTATTCAATCTCAGGGCAGCTGTTCAGCTTCAGAATCCTCACCAAGTAGGGAAGTCACAATTGAAGGCATTATAGATGAGATGCAGTTAAGGATAAGAAGGCTGGAACGGTGGAATACAATCAATACAGTGATATGGACTTTTGTGATGTCTGCCCTTGTTGGTTATTCACTCTACCAAAGGAAACGCCAATAA 2946 40.97 MDDEVVQRAFQEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKSSLAEKVASVIGCTVVSMENYRDGVDDGNDLNSIDFDALVSNLEDLIRGKDTLIPVFDFQEKRRVDSRAIKSASSGVVIVDGTYALHSRLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCKSETPNGHSAYSFHGNEAQTDNFIEMYLRPPSANEEARINDWIKVRQSGIRYYLSLGDQRIVDKNYIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTSVSNGHLSMSFETIDSLGETFMVLRGTDRKTVGAEVLRMGVNGPWITKSYLELILERKGVPRLNTPPLLSSISPTSNQEKVVVAPKPIRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISPDPLHADSSVTDPSSFRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIGNMEINQLFKFVITYFQFSGRVGSHPAIHGGPSGSGKTSLAHKMANIVGCEVVSLESYYKSEHVKDFKCDDFSSLDLSLLSKNIDDVKNCRRTKVPIFDLETGARSGFKELEVSEDCGVVIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRARSFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSVQNFIDIYLKLPGTSANGFLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQDGKILIEVDNLQDVSPYLQIKGVNKEAVAAAGSTLKLDGSYTTKSYLQIILESLPASERSSSGIHSHQAARLQELVEFIQSQGSCSASESSPSREVTIEGIIDEMQLRIRRLERWNTINTVIWTFVMSALVGYSLYQRKRQ* 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4612429 4635979 + Vvi1g429 Vvi1g429 769629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g429 981 Pfam Phosphoribulokinase / Uridine kinase family 105 223 IPR006083 GO:0005524|GO:0016301
Vvi1g429 981 Pfam Phosphoribulokinase / Uridine kinase family 552 715 IPR006083 GO:0005524|GO:0016301
Vvi1g429 981 CDD UMPK_like 78 226 - -
Vvi1g429 981 Gene3D - 734 894 - -
Vvi1g429 981 Gene3D - 63 243 IPR027417 -
Vvi1g429 981 Gene3D - 552 733 IPR027417 -
Vvi1g429 981 PANTHER URIDINE KINASE 635 972 - -
Vvi1g429 981 PANTHER URIDINE KINASE 2 420 - -
Vvi1g429 981 PANTHER URIDINE KINASE 552 634 - -
Vvi1g429 981 CDD UMPK_like 552 718 - -
Vvi1g429 981 SUPERFAMILY CYTH-like phosphatases 749 889 IPR033469 -
Vvi1g429 981 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 552 634 - -
Vvi1g429 981 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 635 972 - -
Vvi1g429 981 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Vvi1g429 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Vvi1g429 981 Coils Coil 973 981 - -
Vvi1g429 981 SMART AAA_5 544 691 IPR003593 -
Vvi1g429 981 SMART AAA_5 61 211 IPR003593 -
Vvi1g429 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 711 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g429 - - - vvi:100261233 1772.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35