Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g430 ATGCCCGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCATCCAGGTGGAGAAGGTCTTATCTGTTCGTTGCCAAAAAGTTGCAAATGGTTTCAGTGGGATGAAATTAAGACTGAGGAAGTCCATAAACAGGGTTTAAAACTTTCTGAGAAAGTTCTCACCCACTTGGAAGACGTTGGACAACAGTTAGCACTGACATTCAATAATGATGGTTCAATGCTTGCTGTTGGTGGCGAGGACGGCAATTTAAGGGTGTTCAAGTGGCCTAGCATGGAAAATGTTCTCAGTGAGGCTCAAGCTCATGCAACCGTGAAGGATTTTGATTTCAGTCCTGATGGAAAATTTCTCGTCTCCTTGGGATCTGGTGGTCCTGGTAGGGTTTGGGATCTAACATCATCAACGGCTATAGCTTCACTACCCAAGGAAAATGATGAGGTTTTTGCATTCTGCAGATTTTCTCAAACTAACGTCAAGAATCAGGTTCTGTATATTGCTGCAGTTCGAGACCGAGGTGCATGCATTGTGACATGGAACACCACCACATGGAAGAAGGTGGGATCAAAGCAAATAGTCCGTGACTCAATTTCTGCTTTCAGTGTTTCAGCTGATGGAAAGCTCCTTTCAGTTGGGACAATCCAGGGAGACATTGTGATTGTGAATTCTGCAAGTATGCAGGTGCAGGCAGTGGTTAGAAAAGCACACCTTGGCATAGTGACAACAATGAGGTTCTCCCAAGATTCAAGGGCTTTGGTCTCTGCATCCATGGATTCCAGTGCAAGGGTGACAGTAATCAAGGAGATGAAGAAAAATGGATTTAGCTTATGGATCATTATCTTCATCATCATAGTTGCAATTGCTGCGTACCTCATGAAGACCAAAGGGATTGTTCCTTAA 909 43.56 MPVFKLGIGADLPYRMAVHPGGEGLICSLPKSCKWFQWDEIKTEEVHKQGLKLSEKVLTHLEDVGQQLALTFNNDGSMLAVGGEDGNLRVFKWPSMENVLSEAQAHATVKDFDFSPDGKFLVSLGSGGPGRVWDLTSSTAIASLPKENDEVFAFCRFSQTNVKNQVLYIAAVRDRGACIVTWNTTTWKKVGSKQIVRDSISAFSVSADGKLLSVGTIQGDIVIVNSASMQVQAVVRKAHLGIVTTMRFSQDSRALVSASMDSSARVTVIKEMKKNGFSLWIIIFIIIVAIAAYLMKTKGIVP* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4638277 4649298 - Vvi1g430 Vvi1g430 769630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g430 302 SMART WD40_4 96 134 IPR001680 GO:0005515
Vvi1g430 302 SMART WD40_4 186 225 IPR001680 GO:0005515
Vvi1g430 302 SMART WD40_4 54 92 IPR001680 GO:0005515
Vvi1g430 302 SMART WD40_4 228 268 IPR001680 GO:0005515
Vvi1g430 302 Gene3D - 2 274 IPR015943 GO:0005515
Vvi1g430 302 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 3 300 IPR045260 GO:0005085
Vvi1g430 302 PANTHER SEC12P-LIKE 2 PROTEIN-RELATED 3 300 - -
Vvi1g430 302 Pfam WD domain, G-beta repeat 60 91 IPR001680 GO:0005515
Vvi1g430 302 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 10 266 IPR011047 -
Vvi1g430 302 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 143 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g430 K14003 PREB, SEC12; prolactin regulatory element-binding protein - vvi:100242169 593.193
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g430 . . . . . . . . . . . Cma04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01025 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007496 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 1 3 2 1 1 3 1 1 1 1 1 1 1 1 36