Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g435 ATGTGGACGATGGATTCTAGTGATAGCAGCGACCTTACCATGTCTGATTCCTTCCATGGTCGGAAACTTCGGCCTCTCGTTCCAAGGCCTAATGCTTCTGTCCTCCCCAAGATTACAGTGAATTCTACAGTGGCAATCTCTCCTTGTATTAGTCACCTTCATGGCACTGATCTTTTTGCATTGAATCACCATCTGGGTGGTACATCTGATCAGCAAAGAAAGACAGATTTCAACACACAACCCTTCGGGAGCTCAAGGTGGAATCCAACACCAGAGCAGCTACAAGCCCTGGAGGAGCTGTATCGACGAGGAACGCGAACACCCACTGCTGAACAAATCCAACAAATTGCTGCACAACTTCGTCTGTTCGGCAAGATTGAAGGGAAGAATGTGTTTTACTGGTTTCAAAATCATAAAGCGCGAGAACGCCAGAAACGCCGTAGAGAGTTGGAGTCAGATTCTGAAGAACAACAGCGTGATAATGGTAGCCTAGAAAGGAAAGAATCAGTGCTGAGAAGGACATGTATTGAAGTTGAACAGACAAAGAACTGGGTGGTGCCCTCTTCAAACTGCAGTACACTCTCTGAGGAATCTGTTTCAATACAGAGAGCAGCGGTTGCAGAAAGTAGAACAGATGTGTGGTTTCAATTTGAGGAGAGAGAATTACAGCAGACAAGAAGCACAGTAGAAAGGCAGGCCACATGGCAGTTGATGGGGCTCACCTCTTCTCCTCCTTCCCAACTTATAGACACCATAACCACAACCACCGTAGCCGAAGCATTGAATACAATATACCCAAAGCAGAAGCCATTAAGCCCTCAAAGTCTCAGACCCAACACCCACCTCGAACATGAAACCAGGGAGTCTCAAACCCTTCAACTCTTCCCAGTTCAGGGGGGCCAGAGCTTCAATGCTGCTAATGAAATCATTAGCGTGGCTGAGATGGAGAATGGATTACCCATCACAACCATAGACACCAACTTCACTCCAAACCAGTTTTTTGAGTTCCTCTGA 1014 46.65 MWTMDSSDSSDLTMSDSFHGRKLRPLVPRPNASVLPKITVNSTVAISPCISHLHGTDLFALNHHLGGTSDQQRKTDFNTQPFGSSRWNPTPEQLQALEELYRRGTRTPTAEQIQQIAAQLRLFGKIEGKNVFYWFQNHKARERQKRRRELESDSEEQQRDNGSLERKESVLRRTCIEVEQTKNWVVPSSNCSTLSEESVSIQRAAVAESRTDVWFQFEERELQQTRSTVERQATWQLMGLTSSPPSQLIDTITTTTVAEALNTIYPKQKPLSPQSLRPNTHLEHETRESQTLQLFPVQGGQSFNAANEIISVAEMENGLPITTIDTNFTPNQFFEFL* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4685929 4687708 - Vvi1g435 Vvi1g435 769635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g435 337 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 337 IPR044555 GO:0003700|GO:0099402
Vvi1g435 337 MobiDBLite consensus disorder prediction 144 166 - -
Vvi1g435 337 Gene3D - 79 145 - -
Vvi1g435 337 SMART HOX_1 82 149 IPR001356 GO:0003677
Vvi1g435 337 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677
Vvi1g435 337 PANTHER WUSCHEL, PUTATIVE-RELATED 4 337 - -
Vvi1g435 337 MobiDBLite consensus disorder prediction 268 289 - -
Vvi1g435 337 Coils Coil 140 167 - -
Vvi1g435 337 SUPERFAMILY Homeodomain-like 81 149 IPR009057 -
Vvi1g435 337 Pfam Homeodomain 85 144 IPR001356 GO:0003677
Vvi1g435 337 CDD homeodomain 86 146 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g435 - - - vvi:100250994 674.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g435 Vvi17g212 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01371 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14510 PF00046 Homeodomain 9.50E-21 CL0123 Vvi TF