Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g437 ATGCTATCCAGAGAGCGATCCACCAAGGTCTTCCGCTTGGCACTCAATTTCTCAAGTCTTCTTCACGCTCATGGTTCCTCCACTGGCCAATCACTGCCCATTACCAAACAAGCCTTGACAACCCTCCTGCAATCATGTTCTTCACACCCAAGCCTCCTCAAACAACTCCATGCTCTCCTCCTCACAACAGGCCTTTCCATCAAGAACGCCCTCATCACCCAGCTTCTTACCTCCCTGACTCTCTTAGGGGATATGTCATACGCTCGTCAACTGTTCGACGAAATGCACAAGCCAAGGCCCTTTTTGTGGAACACCATCATGAAAGGGTACGTGAAAAATGGCATTCCCGATAAGGCAGTCTCGGTTTACGGGAAAATGCGTCATCTTGGTGTTCGTCCCGACCCCTTTACGTTTCCTTTTGTGATCAAGGCCTGTGCTGAACTGGCTGAATTGTGGGCAGGTTTGGGTATGCATGGCCATGTTGTGAAACATGGATTGGAGTTTGTTGCTGCTGTGAGGACTGAATTGATGATAATGTATGTTAAATTCGGGGAGTTGGGTTGTGCTGAGTTCTTGTTTGGGAGTATGGTTGAGAGAGATTTGGTAGCTTGGAATGCTTTGATTGCTGTGTGCGTGCAAACTGGATTTTCCAGCAAGGCTCTCCAGTCGTTTCGGGAAATGGGCATGGCCGGAATAAAGCCTGATTCTGTAACTATTGTGAGTGCTCTTTCGGCTTGTGGTCATTTGGGGTGTTTAGAAACTGGTGAGGAGATTTATGAGTTTGCTAGAGAAGAAGGGATTGATAGCAATATAATTGTTCATAATGCAAGGCTTGACATGTGCGCAAAATGTGGGGACATGGATAAGGCCATGAATCTATTTGATGAGATGCCTCAAAGGAATGTAATTTCTTGGAGCACTGTGATTGGAGGGTACGCAGTTAATGGGGAGAGTGAGAAAGCATTGGCTTTGTTCTCTAGGATGAAGAATCAAGGAGTACAACCAAACTATGTCACCTTTCTTGCCGTTCTATCTGCTTGCAGTCACACTGGACGAGTGAATGAAGGGTGGCAATATTTTAATTTCATGGCTCAATCAGATGATAAAAATATCCAACCTAGAAAAGAGCACTATGCTTGCATGGTTGATCTTCTTGGCCGGTCAGGACATCTTGAAGAGGCTTATAACTTCATTAAAATTATGCCCATTGAGGCAGACCCAGGAATTTGGGGTGCTTTATTGGGGGCCTGTGCTATTCATCAGAATATCAAATTGGGTCAGCATGTGGCTGATTTACTCTTTGAATTAGCTCCTGAGATCGCCTCATATCATGTTTTATTGTCCAACATGTATGCTGCAGCTGGTAGGTGGCATTGTGTTGAGAAGGTGAGGCAGAGAATGAAAAAGAAAGGGGCAAGAAAAGTAGCTGCTTACAGCTCAGTCGAATTTAATGGTGAAATTCATATCTTATATGGGGGAGACAAGTCACACCCACAGTCAGCAAGTATATTGGCGAAATTAGAGGATTTACTTAAACAGATGAAGAGTATGGGTTACATTCCAGAGACTGATTCTGTATTCCATGATGTGGAGGATGAGGAAAAGGAATCCACACTCAGCACTCACAGTGAAAAGCTTGCCATTGCATTTAGTCTTATCAATGGAAGTCCCAAGTTCCCCATTAGAGTAATGAAAAATTTGAGAATTTGTGGTGATTGTCATACTTTCTGCAAACTTGTTTCCAGAATTACAATGAGAGAGATCATCATGAGAGATAAGAACCGATTTCATCATTTTAAAAATGGCATTTGTTCATGCAAGGATTTCTGGTGA 1833 43.64 MLSRERSTKVFRLALNFSSLLHAHGSSTGQSLPITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4707474 4710202 - Vvi1g437 Vvi1g437 769637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g437 610 Pfam PPR repeat family 200 246 IPR002885 -
Vvi1g437 610 Pfam PPR repeat family 300 348 IPR002885 -
Vvi1g437 610 Pfam PPR repeat family 101 146 IPR002885 -
Vvi1g437 610 Gene3D Tetratricopeptide repeat domain 156 251 IPR011990 GO:0005515
Vvi1g437 610 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Vvi1g437 610 TIGRFAM PPR: pentatricopeptide repeat domain 102 134 IPR002885 -
Vvi1g437 610 TIGRFAM PPR: pentatricopeptide repeat domain 273 301 IPR002885 -
Vvi1g437 610 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Vvi1g437 610 Pfam E motif 420 481 IPR046848 -
Vvi1g437 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi1g437 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Vvi1g437 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 603 - -
Vvi1g437 610 PANTHER BNAC07G48870D PROTEIN 34 603 - -
Vvi1g437 610 Pfam PPR repeat 378 401 IPR002885 -
Vvi1g437 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Vvi1g437 610 Gene3D Tetratricopeptide repeat domain 15 155 IPR011990 GO:0005515
Vvi1g437 610 Gene3D Tetratricopeptide repeat domain 252 366 IPR011990 GO:0005515
Vvi1g437 610 Gene3D Tetratricopeptide repeat domain 367 488 IPR011990 GO:0005515
Vvi1g437 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vvi1g437 610 Pfam E+ motif 492 514 IPR046849 -
Vvi1g437 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 300 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g437 - - - vvi:100267876 1214.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187