Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g438 ATGGCTTCCACATCACCATGGAGATTGTCACGGAAGCCAAACACCGCCCACTCTGCCATATGCAATCCCTCGACCTTCAATTCTCTACACTGCTTTATTCACAGAAGAAGAAGAGCTCGTCTCACCACTTCCTCCCTGAAGGATTCTCAATCATCATCCTCATCCTCATCTTCATCCTCTTCTTTTTCTTGCACCCCTATCACTCCCAAAAGGAGACCGATAAAATCAGTTCAATTACCGGTGCTTCCTGATAACAAAAAACCCACTACATTTGGGCATAATGGTGCTACCAAGGTACCAACCTTAAGCCTGAAGTCCTTGTTCGGAAGGCGGTCTCTGTGGCGGAGGATCTTATTCGCGTCTAGAAAGGTCAGGGGCATCATTTTGCTCAATGTTCTCACTGTTGTCTATGCTAGTAATATTCCAGTTGTGAAAGAGGTTGAAGCAATCATGGACCCAGCAACCTTTGCTGCTGTGCGCTTTGTTGTGTCTGCCATACCATTTATCCCCTTTGTAGTACGAGCACGAGGTGATGTTCAGACCCGTAATGCGGGGATAGAGTTGGGTTTCTGGGTCAGTTTAGGATACCTTATGCAGTCACTTGGTCTGCTCACATCGGATGCTGGGCGAGCTTCATTTCTCTCTATGTTCACTGTAATTGTGGTTCCCTTGCTTGATGGTATGTTAGGAGCAACAGTTCCTGCTCATACCTGGTTTGGAGCTCTGATGTCCATCTTGGGGGTTGCTATGCTGGAGTCCAGTGGATCTCCTCCAAGTGTTGGAGATCTGTTAAACTTTTTAAGTGCAGTTTTTTTTGGTGTTCATATGCTAAGAACTGAACATATTTCAAGAAGTACAAGTAGAGAAAACTTCTTACCTCTCCTTGGTTACGAGGTATGCATCGTTGCTCTATTTTCAACCATCTGGTATTTTGTCGGAGGCTCGTTTGGTGCCATCCAAGAATGTGACCTGTCATCAGGGATGTGGACAATGTTGTGGGATTGGATGGTTGCATTTCCATGGATACCGGCATTTTACACAGGCATAATCTCTACTGGGTTATGCTTATGGATAGAGATGGATGCAATGCGTGATGTATCAGCCACAGAAACTGCAATAATTTATGGATTGGAGCCTGTCTGGGGTGCTGGTTTTGCATGGTTTCTCCTTGGTGAAAGATGGAGTTCCCTTGGCTGGATTGGGGCTGCTCTTGTGCTAGGTGGAAGCTTAACAGTGCAGATATTTGGATCATCATCTCCCAACAAATCCAGAGAAGAAGAGCGTAATGAGAAAGATGATCATCTGCTGGTTCCAGATAAAGAAAGTGGTTATTCTACTTCTCCTGTTGTTGCCAAGTTTAGAAAGGATGCTTCTGATATATGA 1383 45.05 MASTSPWRLSRKPNTAHSAICNPSTFNSLHCFIHRRRRARLTTSSLKDSQSSSSSSSSSSSFSCTPITPKRRPIKSVQLPVLPDNKKPTTFGHNGATKVPTLSLKSLFGRRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAIPFIPFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLDGMLGATVPAHTWFGALMSILGVAMLESSGSPPSVGDLLNFLSAVFFGVHMLRTEHISRSTSRENFLPLLGYEVCIVALFSTIWYFVGGSFGAIQECDLSSGMWTMLWDWMVAFPWIPAFYTGIISTGLCLWIEMDAMRDVSATETAIIYGLEPVWGAGFAWFLLGERWSSLGWIGAALVLGGSLTVQIFGSSSPNKSREEERNEKDDHLLVPDKESGYSTSPVVAKFRKDASDI* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4717257 4721940 + Vvi1g438 Vvi1g438 769638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g438 460 PANTHER OS03G0707200 PROTEIN-RELATED 52 460 - -
Vvi1g438 460 MobiDBLite consensus disorder prediction 421 439 - -
Vvi1g438 460 Pfam EamA-like transporter family 125 251 IPR000620 GO:0016020|GO:0016021
Vvi1g438 460 Pfam EamA-like transporter family 261 410 IPR000620 GO:0016020|GO:0016021
Vvi1g438 460 MobiDBLite consensus disorder prediction 418 447 - -
Vvi1g438 460 PANTHER - 52 460 - -
Vvi1g438 460 MobiDBLite consensus disorder prediction 44 67 - -
Vvi1g438 460 SUPERFAMILY Multidrug resistance efflux transporter EmrE 329 417 - -
Vvi1g438 460 MobiDBLite consensus disorder prediction 43 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g438 - - - vvi:100257599 890.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g438 Vvi17g210 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0756 Cone19ag0761 . . Lsi04g01195 . Chy10g00266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01180 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010866 0 0 0 0 0 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 2 32