Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g44 ATGGATCCACCGCAACAGAGACCAGAGTCTCCGATGGAAATCCCCATGGATCAGCAGGGCCGGAGATCCGAAACTCCGCCGCCTCGCCCTCGACCAGCACCAGCAGCAGCCGCAGGCGGAGATTTCTCTGCGATCATCACCGTGCTTTTCTTCTTCATCCTCATTTTCTCCTTTGTAGCATTCCAGTCATCCTCAACATTAACAAACAACTTAACCCTTTTACACCAAGTCCCAGAAGGTCATGTTGGGATGTATTGGAGAGGAGGTGCTCTTCTAAAAACAATTACAGAGCCAGGTTTCCATCTAAAGATGCCCTTGGTAACCCAGTTTGAGCCCATTCAAGTGACTCTCCAGACGGATCAGGTTAGGGATATTCCATGTGGTACCAAAGGAGGCGTCATGATCAACTTTGAGAAGATAGAGGTTGTTAACCGGCTTCATAAGGACTATGTGTATGAGACACTGCTAAACTATGGTGTGCAGTATGACAACACATGGATATATGATAAGATTCACCATGAGATCAATCAGTTTTGCAGTGCTCATTCCCTTCAACAAGTTTATATTGATATGTTTGATCAGATTGATGAAAAAATGAAAGATGCTCTTCAAGGTGATTGCACACGTTATGCTCCTGGTATTGAAATCATCAGTGTGCGTGTCACAAAACCTAGTATCCCGGAGAGTATAAGGCGCAATTTCGAACAGATGGAGCAGGAACGCACTAATGTTTTGATTGCCATGGAGAAACAGAAGGTCGCCGAGAAGGAGGCAGAGACACGGAAGAAGATGGCTATAACTGAAGCCGAGAAGAATGCCCAGGTTAGCAAGATCCTCATGCAACAAAAGTTGATGGAGAAAGACAGTTCCAGAATGCAGGAGGAAATTGAGAACCAAATGTACATGGCTCGAGAAAAGAGCTTGGCAGATGCTAGTTTCTATAGGCTGATGAAAGAAGCAGAAGCAAACAAGTTGAAGCTTACTCCTGAGTACTTGGAGCTCAGATTCATTGAAGCCATAGCTAATAATTCCAAAATCTTTTTTGGAAACAAGGTCCCAAATATGGTTTTTGACCAGAGACTACTTGGGAACTTCCTCCAAAGTGTAGCCAAAAGGGGGGACACCGAAGCTGAGTTCTAG 1140 44.82 MDPPQQRPESPMEIPMDQQGRRSETPPPRPRPAPAAAAGGDFSAIITVLFFFILIFSFVAFQSSSTLTNNLTLLHQVPEGHVGMYWRGGALLKTITEPGFHLKMPLVTQFEPIQVTLQTDQVRDIPCGTKGGVMINFEKIEVVNRLHKDYVYETLLNYGVQYDNTWIYDKIHHEINQFCSAHSLQQVYIDMFDQIDEKMKDALQGDCTRYAPGIEIISVRVTKPSIPESIRRNFEQMEQERTNVLIAMEKQKVAEKEAETRKKMAITEAEKNAQVSKILMQQKLMEKDSSRMQEEIENQMYMAREKSLADASFYRLMKEAEANKLKLTPEYLELRFIEAIANNSKIFFGNKVPNMVFDQRLLGNFLQSVAKRGDTEAEF* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 506834 513217 - Vvi1g44 Vvi1g44 769244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g44 379 SUPERFAMILY Band 7/SPFH domain 104 241 IPR036013 -
Vvi1g44 379 Pfam SPFH domain / Band 7 family 76 258 IPR001107 -
Vvi1g44 379 MobiDBLite consensus disorder prediction 1 36 - -
Vvi1g44 379 Gene3D Band 7 domain 101 239 IPR036013 -
Vvi1g44 379 SMART PHB_4 72 238 IPR001107 -
Vvi1g44 379 PANTHER ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG 40 372 IPR033294 GO:0005783|GO:0031625
Vvi1g44 379 PANTHER ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG 40 372 - -
Vvi1g44 379 CDD SPFH_like_u3 74 359 IPR033294 GO:0005783|GO:0031625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g44 K23341 - vvi:100247350 714.916