Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g45 ATGTTCACCCTCGTCGCCGGTTCTGTACCGGCGGGTTTGGGAGCAACGGCGAAATGCGGAAGCCTCTGGCAATTCAGAGCAACTGCCGATGTGTTCCCTTCATTCATTCCGAAAGAAGTCGAGAGAATCAAAGACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAGAAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTTGGTGCTGCAGTTGCAATTGACTTTACAGCTAACCATCCAGAAGCTGTTGATAAGCTGGTCTTAATTGATGCAAGTGTATATACAGAAGGCACGGGAAACCTAATGAAGTTACCCAGGGCGGTTGCCTATGCTGGGGTCTATATATTGAAGAGCATTCCTCTGCGCTTTTATGCAAATGTTTTGGCTTTCAAGAGTATATCATTCACTAGAAGCTCAGACTGGACAAAAGTGGGCCGCCTACATTGTCTATATCCCTGGTGGGAGGATGCAACTGTGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAGGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTGAGGTTACATTGTGAATTGCCGAATGCAATTATAAGCCAAATACCAGATTGTGGGCACCTCCCTCATGTGGAAAAGCCTCACTCTGTTTCCAAGTTGATTATGGAATTTGTTCAAGAGGATAGCTATAAAGAGGCCCAATGCATTTCCCAGTATTGA 1023 45.36 MFTLVAGSVPAGLGATAKCGSLWQFRATADVFPSFIPKEVERIKDPFARKLATRIERLPVQLSSSNSCIMSSCVKPLSPSKTSPVVLLHGFDSSCLEWRYTYPLLEEAGLETWAVDILGWGFSDLERLPSCDVATKRDHFYQLWKSHIKRPMILVGPSLGAAVAIDFTANHPEAVDKLVLIDASVYTEGTGNLMKLPRAVAYAGVYILKSIPLRFYANVLAFKSISFTRSSDWTKVGRLHCLYPWWEDATVNFMISGGYNVSSQIQQVKKKTLIIWGEDDQIISNKLAVRLHCELPNAIISQIPDCGHLPHVEKPHSVSKLIMEFVQEDSYKEAQCISQY* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 515729 520849 + Vvi1g45 Vvi1g45 769245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g45 340 PANTHER HYDROLASE 26 335 - -
Vvi1g45 340 SUPERFAMILY alpha/beta-Hydrolases 83 327 IPR029058 -
Vvi1g45 340 Gene3D alpha/beta hydrolase 75 331 IPR029058 -
Vvi1g45 340 Pfam Alpha/beta hydrolase family 85 318 IPR000073 -
Vvi1g45 340 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 26 335 - -
Vvi1g45 340 PRINTS Alpha/beta hydrolase fold signature 154 167 IPR000073 -
Vvi1g45 340 PRINTS Alpha/beta hydrolase fold signature 272 286 IPR000073 -
Vvi1g45 340 PRINTS Alpha/beta hydrolase fold signature 109 124 IPR000073 -
Vvi1g45 340 PRINTS Alpha/beta hydrolase fold signature 168 181 IPR000073 -
Vvi1g45 340 PRINTS Epoxide hydrolase signature 89 107 IPR000639 GO:0003824
Vvi1g45 340 PRINTS Epoxide hydrolase signature 109 124 IPR000639 GO:0003824
Vvi1g45 340 PRINTS Epoxide hydrolase signature 303 325 IPR000639 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g45 - - - vvi:100254284 692.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g45 Vvi14g1036 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g45 . Blo16g01089 . Bda11g01180 Bpe13g01378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0543 . . . . . . . Bda11g01180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001673 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 3 3 2 2 2 2 2 3 3 2 70