Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g450 ATGTCTTCCACTTCGACACTTTCGCTGCCTCTACAACGCAATGCCCGGAAAAAAGGCTTCCCATCCTCCCCAGTCACAAAGCCATTCACAGCTAATCTTACTTTTTCGTTTTCATTGCGTTTAACTAAAGCTATTCACGTAAAATCTTCCAGCACTGCAAAGTTTAATGAAGTTGTGGTGGATGAAGAGATAGACAAGATTAGGAGGCTCCAAAATGGCTCAGATGTTCGAGGGGTTGCGGTGGAGGGTGAGAAGGGCCGAACTGTGGATCTCACGCCACCGGCTGTGGAAGCAATTGCTGAGAGTTTTGGTGAGTGGGTAATGAATAGATTGGAGAGTGAAGGAGGCGTGCCAGTTGAAGGTGTTAGGGTGTCTCTTGGGCGTGACCCTCGAATCTCTGGCGCATCTTTGAGTGCAGCAGTGTTTTCAGGTCTCGCTCGAGCTGGTTGTTTAGCGTTCGATATGGGACTTGCAACCACACCCGCTTGTTTCATGAGTACATTGTTGCCTCCGTTTGCCTATGACGCTTCTATAATGATGACAGCATCTCACTTACCCTACACGCGAAACGGCCTAAAATTCTTCACTAGGAAAGGGGGGCTGACCTCGCCGGAAGTGGAGGCAATATGTGACAAGGCGGCCAGGAAATATGCCAACAGGCTTACAAAAGTATCAACCACGTTGAGCATTCCTCCAACAAAAGTTGATTTCATGAGCACTTATGCGAAGCATCTCCGGGACATCATCAAGGAGAGGGTGAACCATCCCTTGCACTATGACACTCCACTCAAAGGGTTTCAGATAATTGTGAATTCTGGGAATGGATCAGGAGGCTTCTTCACATGGGACGTGTTAGATAAACTTGGTGCAGACACCTTTGGCTCCCTAAACCTCAGCCCAGATGGAATGTTCCCCAACCACATTCCCAACCCTGAGGACAAAACTGCCATGGCCCTAACAAAGGCTGCAGTCCTCGAAAACAATGCTGATCTTGGAATTGTTTTTGATACCGATGTAGATCGCAGTGGTGTGGTGGATAGTTCAGGGAACCCCATCAATGGTGACAAGCTCATTGCACTCATGGCTGCCATTGTATTGAGGGAACACCCTGGATCCACCATTGTCACCGATGCTCGCACAAGCATGGCTCTCACGCAATTCATCGCCAACAGAGGGGGTCATCATTGCTTGTATCGTGTTGGCTACAGGAATGTCATTGATAAAGGAGTTCAGCTTAATAAAGATGGCATTGAAGCACATCTCATGATGGAAACATCTGGCCATGGTGCTCTTAAAGAGAATCATTTCCTCGATGATGGGGCTTACATGGTGGTAAAAATCATCATAGAAATGGTACGCATGAAGCTTGCAGGATCATATGAAGGAATTGGGAGTCTCATAGAAGACCTACAAGAACCATTTGAATCCGTTGAGCTGAGGATGAACGTCATCTCTGAGCCTAAACATGCAAAGGCAAAAGGTGCTGAAGCAATTGAAGCATTCCGAAACTACATCGAGGAAGGAAAGCTAGAGGGTTGGGAATTGGATTCCTGTGGAGACTGTTGGGTAAGTGAAGGCTGCCTCGTGGATTTGAACGACACGCCAGCTGCCATTGATGCTTACATGTACAGGGCTAAGGTTTCAGACAAAGAACATGGACAACATGGTTGGATACACCTTCGGCAGAGCATTCACAACCCAAATATTGCAGTAAACATACAATCATCTGTGCCTAGTGGCTGCCAATCCATGGCAAGAGTACTCAGAGAGAAGTTTCTCATTGCAAGTGGAATGGAGAAAAGTCTTGACATCACTCAGATCGATAAGTACGCAAAAAGTGGACAGGTAGGTTAA 1854 46.98 MSSTSTLSLPLQRNARKKGFPSSPVTKPFTANLTFSFSLRLTKAIHVKSSSTAKFNEVVVDEEIDKIRRLQNGSDVRGVAVEGEKGRTVDLTPPAVEAIAESFGEWVMNRLESEGGVPVEGVRVSLGRDPRISGASLSAAVFSGLARAGCLAFDMGLATTPACFMSTLLPPFAYDASIMMTASHLPYTRNGLKFFTRKGGLTSPEVEAICDKAARKYANRLTKVSTTLSIPPTKVDFMSTYAKHLRDIIKERVNHPLHYDTPLKGFQIIVNSGNGSGGFFTWDVLDKLGADTFGSLNLSPDGMFPNHIPNPEDKTAMALTKAAVLENNADLGIVFDTDVDRSGVVDSSGNPINGDKLIALMAAIVLREHPGSTIVTDARTSMALTQFIANRGGHHCLYRVGYRNVIDKGVQLNKDGIEAHLMMETSGHGALKENHFLDDGAYMVVKIIIEMVRMKLAGSYEGIGSLIEDLQEPFESVELRMNVISEPKHAKAKGAEAIEAFRNYIEEGKLEGWELDSCGDCWVSEGCLVDLNDTPAAIDAYMYRAKVSDKEHGQHGWIHLRQSIHNPNIAVNIQSSVPSGCQSMARVLREKFLIASGMEKSLDITQIDKYAKSGQVG* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4852704 4856279 - Vvi1g450 Vvi1g450 769650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g450 617 PANTHER OS06G0476200 PROTEIN 11 615 - -
Vvi1g450 617 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 241 349 IPR005845 GO:0005975
Vvi1g450 617 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 69 218 IPR005844 GO:0005975|GO:0016868
Vvi1g450 617 SUPERFAMILY Phosphoglucomutase, first 3 domains 74 249 IPR016055 GO:0005975|GO:0016868
Vvi1g450 617 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g450 617 Gene3D - 71 226 - -
Vvi1g450 617 Gene3D - 346 463 - -
Vvi1g450 617 PANTHER PHOSPHOHEXOSE MUTASE 11 615 - -
Vvi1g450 617 CDD PMM_PGM 70 592 - -
Vvi1g450 617 PRINTS Phosphoglucomutase/phosphomannomutase family signature 176 190 IPR005841 GO:0005975|GO:0016868
Vvi1g450 617 PRINTS Phosphoglucomutase/phosphomannomutase family signature 265 284 IPR005841 GO:0005975|GO:0016868
Vvi1g450 617 PRINTS Phosphoglucomutase/phosphomannomutase family signature 300 313 IPR005841 GO:0005975|GO:0016868
Vvi1g450 617 PRINTS Phosphoglucomutase/phosphomannomutase family signature 329 344 IPR005841 GO:0005975|GO:0016868
Vvi1g450 617 SUPERFAMILY Phosphoglucomutase, first 3 domains 353 453 IPR016055 GO:0005975|GO:0016868
Vvi1g450 617 Gene3D - 267 345 - -
Vvi1g450 617 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 353 453 IPR005846 GO:0005975|GO:0016868
Vvi1g450 617 SUPERFAMILY Phosphoglucomutase, first 3 domains 239 351 IPR016055 GO:0005975|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g450 - - - vvi:100243950 1230.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33