Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g454 ATGGGTGAGAGAGATATAAAAAAGGAAAATGTGAGGGAGTATCATCATCCTCATCACCCAACTTGCTCCACGTCCCCCACCGGCAAGGGTAAGATGTGGGATGCCGACCCCCAGCAAGACGCCGGCATGGATGAGCTTCTCGCTGTTTTGGGCTACAACGTCAAGGCCTCCGACATGGCTGAGGTCGCTCAGAAGCTTGAACAGCTTGAGGAAGTTATTGTTAATGCTCAGGAGGATGGCCTCTCTCATCTCGCTTCCGAGACTGTTCATTACAACCCCTCCGATCTGTCTAACTGGCTTGGAAGCATGCTCTCCGACACCCAACCAAAACAGGAGCCTTCCATCTTTGACTCCCCGTCTTTGGATTACGATCTCAAAGCAATTCCAGCCAACTCGGTTTCCTCTGTTATTGGGGGTTGGGGAGTTCCCACCGAGTCCGCTCGCCCAGTTGTCCTTGTTGACTCGCAAGAGACCGGAATCAGGCTAGTCCACACCCTAATGGCCTGTGCAGAAGCGGTCCAGCAGGAAAATCTGAAGCTGGCTGAAGCACTTGTCAAGCAAATCGGGTTCCTGGCCGTGTCTCAGGCGGGAGCCATGCGGAAGGTAGCCACCTACTTCGCCGAAGGTCTAGCTCGTCGAATCTACCGACTCTATCCTGATAAGCCTCTCGACTCCTCCATGAAACAAGGGATGCAGTGGCCTGCGCTGATGCAAGCCCTAGCCCTCCGTCCCGGCGGGCCGCCCTCGTTCCGTCTAACCGGAATTGGGCCTCCTTCCACGGACAACACCGATCATCTGCATGAAGTGGGTTGGAAATTGGCCCAGCTGGCGGAGACGATTCATGTGGAGTTCGAATACAGAGGTTTCGTGGCCAACAGTTTGGCAGATCTCGACGCATCCATGCTTGAACTGCGAGATGGGGAGTCCGTGGCAGTGAACTCGGTGTTCGAGTTGCATAGTTTGCTGGCTCGCCCTGGGGGTATTGAGAGGGTGCTGTCGGCGGTGAAAGATATGAAACCAGACATAGTGACGATAGTAGAGCAGGAAGCCAACCACAACGGCCCCGTTTTCCTAGACCGGTTCACCGAGTCGCTTCACTACTACTCCACTCTGTTTGACTCATTGGAAGGGTGTGGTGTGTCGCCGTTTGGTAATAAAAGAATAGGACCTTTTTTTGGTAGCAATTCTATGATGAAATCACTATTTCAGTTGAATCTTGATTTCTGA 1227 53.06 MGERDIKKENVREYHHPHHPTCSTSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSDTQPKQEPSIFDSPSLDYDLKAIPANSVSSVIGGWGVPTESARPVVLVDSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLYPDKPLDSSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPFGNKRIGPFFGSNSMMKSLFQLNLDF* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4894993 4897616 - Vvi1g454 Vvi1g454 769654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g454 408 Coils Coil 59 79 - -
Vvi1g454 408 MobiDBLite consensus disorder prediction 1 19 - -
Vvi1g454 408 Pfam GRAS domain family 162 216 IPR005202 -
Vvi1g454 408 Pfam GRAS domain family 224 377 IPR005202 -
Vvi1g454 408 ProSiteProfiles GRAS family profile. 153 408 IPR005202 -
Vvi1g454 408 MobiDBLite consensus disorder prediction 1 31 - -
Vvi1g454 408 SMART DELLA_2 44 117 - -
Vvi1g454 408 Gene3D - 42 107 IPR038088 -
Vvi1g454 408 PANTHER DELLA PROTEIN GAI1-RELATED 148 224 IPR030006 GO:0003712|GO:0005634
Vvi1g454 408 PANTHER DELLA PROTEIN GAI1-RELATED 223 381 IPR030006 GO:0003712|GO:0005634
Vvi1g454 408 PANTHER DELLA PROTEIN GAI1-RELATED 19 130 IPR030006 GO:0003712|GO:0005634
Vvi1g454 408 Pfam Transcriptional regulator DELLA protein N terminal 44 111 IPR021914 -
Vvi1g454 408 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 148 224 IPR005202 -
Vvi1g454 408 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 223 381 IPR005202 -
Vvi1g454 408 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 130 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14511 PF03514 GRAS 2.80E-56 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g454 K14494 - vvi:100232937 684.485