Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g454 | ATGGGTGAGAGAGATATAAAAAAGGAAAATGTGAGGGAGTATCATCATCCTCATCACCCAACTTGCTCCACGTCCCCCACCGGCAAGGGTAAGATGTGGGATGCCGACCCCCAGCAAGACGCCGGCATGGATGAGCTTCTCGCTGTTTTGGGCTACAACGTCAAGGCCTCCGACATGGCTGAGGTCGCTCAGAAGCTTGAACAGCTTGAGGAAGTTATTGTTAATGCTCAGGAGGATGGCCTCTCTCATCTCGCTTCCGAGACTGTTCATTACAACCCCTCCGATCTGTCTAACTGGCTTGGAAGCATGCTCTCCGACACCCAACCAAAACAGGAGCCTTCCATCTTTGACTCCCCGTCTTTGGATTACGATCTCAAAGCAATTCCAGCCAACTCGGTTTCCTCTGTTATTGGGGGTTGGGGAGTTCCCACCGAGTCCGCTCGCCCAGTTGTCCTTGTTGACTCGCAAGAGACCGGAATCAGGCTAGTCCACACCCTAATGGCCTGTGCAGAAGCGGTCCAGCAGGAAAATCTGAAGCTGGCTGAAGCACTTGTCAAGCAAATCGGGTTCCTGGCCGTGTCTCAGGCGGGAGCCATGCGGAAGGTAGCCACCTACTTCGCCGAAGGTCTAGCTCGTCGAATCTACCGACTCTATCCTGATAAGCCTCTCGACTCCTCCATGAAACAAGGGATGCAGTGGCCTGCGCTGATGCAAGCCCTAGCCCTCCGTCCCGGCGGGCCGCCCTCGTTCCGTCTAACCGGAATTGGGCCTCCTTCCACGGACAACACCGATCATCTGCATGAAGTGGGTTGGAAATTGGCCCAGCTGGCGGAGACGATTCATGTGGAGTTCGAATACAGAGGTTTCGTGGCCAACAGTTTGGCAGATCTCGACGCATCCATGCTTGAACTGCGAGATGGGGAGTCCGTGGCAGTGAACTCGGTGTTCGAGTTGCATAGTTTGCTGGCTCGCCCTGGGGGTATTGAGAGGGTGCTGTCGGCGGTGAAAGATATGAAACCAGACATAGTGACGATAGTAGAGCAGGAAGCCAACCACAACGGCCCCGTTTTCCTAGACCGGTTCACCGAGTCGCTTCACTACTACTCCACTCTGTTTGACTCATTGGAAGGGTGTGGTGTGTCGCCGTTTGGTAATAAAAGAATAGGACCTTTTTTTGGTAGCAATTCTATGATGAAATCACTATTTCAGTTGAATCTTGATTTCTGA | 1227 | 53.06 | MGERDIKKENVREYHHPHHPTCSTSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSDTQPKQEPSIFDSPSLDYDLKAIPANSVSSVIGGWGVPTESARPVVLVDSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARRIYRLYPDKPLDSSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPFGNKRIGPFFGSNSMMKSLFQLNLDF* | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4894993 | 4897616 | - | Vvi1g454 | Vvi1g454 | 769654 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g454 | 408 | Coils | Coil | 59 | 79 | - | - | |
Vvi1g454 | 408 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Vvi1g454 | 408 | Pfam | GRAS domain family | 162 | 216 | IPR005202 | - | |
Vvi1g454 | 408 | Pfam | GRAS domain family | 224 | 377 | IPR005202 | - | |
Vvi1g454 | 408 | ProSiteProfiles | GRAS family profile. | 153 | 408 | IPR005202 | - | |
Vvi1g454 | 408 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Vvi1g454 | 408 | SMART | DELLA_2 | 44 | 117 | - | - | |
Vvi1g454 | 408 | Gene3D | - | 42 | 107 | IPR038088 | - | |
Vvi1g454 | 408 | PANTHER | DELLA PROTEIN GAI1-RELATED | 148 | 224 | IPR030006 | GO:0003712|GO:0005634 | |
Vvi1g454 | 408 | PANTHER | DELLA PROTEIN GAI1-RELATED | 223 | 381 | IPR030006 | GO:0003712|GO:0005634 | |
Vvi1g454 | 408 | PANTHER | DELLA PROTEIN GAI1-RELATED | 19 | 130 | IPR030006 | GO:0003712|GO:0005634 | |
Vvi1g454 | 408 | Pfam | Transcriptional regulator DELLA protein N terminal | 44 | 111 | IPR021914 | - | |
Vvi1g454 | 408 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 148 | 224 | IPR005202 | - | |
Vvi1g454 | 408 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 223 | 381 | IPR005202 | - | |
Vvi1g454 | 408 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 19 | 130 | IPR005202 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14511 | PF03514 | GRAS | 2.80E-56 | CL0063 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g454 | K14494 | - | vvi:100232937 | 684.485 |