Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g456 ATGGTGGCTGCTGCTGCTGCCGATGATCATCAGGTTAGATCGAAGTCCAAGCACAGGTCCGATGATGAAGATGACGACAGTGATGACGAAGTCGCGGCGGAGAACGGGCAGGTCCAAGAGAAGAAGGTGAAGAAGCCTAAGGTGAAGAAGCCCAAGGTTACGGTGGCTGATGCGGCCTCCAAGATTGATGCGGCTGATCTGGCGGCTTTTCTTGTTGATGTTTCGGCATCGTACGAATCGAAAGAGGATATACTGCTAATGCGGTTTGCCGATTATTTTGGTCGCGCATTTTCAGCTGTGAATTCTTCGCAGTTTCCTTGGATGAAGATGTTCAGGGAGTCAACGGTCGCCAAGATCGCAGATGTCCCTCTTTGTCATATTTCGGATGTTGTTTATAAGACATCAGTTGACTGGATCAACCAACGTTCCTCTGAGGCACTTGGTTCCTTTGTGTTATGGTCTTTAGACTGCATTCTTTCTGACTTAGCAAGCCAGCAAGCTGTTACAAAAGGCTCCAAAAAGGGCTTGCAGCATGCATCATCGAAATCTCAGGCTGCAATATTTGTAGTATTAGCAATGGTATTGAGGAGAAAGCCTGATGTGTTAATTAATTTGTTACCAACATTGAGGGAAAATTCGAAGTATCAAGGACAGGATAAGCTTTCAGTTATAGTATGGATGGTGGCTCAGGCTTGTCAAGGAGACCTGGCTGTAGGGTTGTATTTATGGGCACATAACATATTGCCTATAGTTAATGGCAAATCAAGTTGTAATCCACAGTCCAGGGATTTGGTTCTACAATTAGTGGAAAGAATTTTGTCTGCCCCAAAAGCCCGCACTATTTTAGTAAATGGAGCTATTAGGAAGGGTGAGCGATTAGTGCCTCCCTCAGCATTTGAGATATTGATGCGAGCTACCTTCCCTGCATCTTCAGCACGGATAAAGGCAACTGAAAGGTTTGAGGCAGTATACCCCACTCTAAAAGAAGTAGCCCTAGCTGGTCCTGCTGGAAGCAAAGCAATGAAGCAGGCTTCACAGCAGATACTGACTTTCACCATCAAAGCAGCAGGAGAAAGTATCCCAGAATTATCCAATGAAACAAGTAGCATTTTTATCTGGTGTTTGACTCAAAATCCTGATTGTTATAAGCAATGGGACAGGATCTATTTGGATAATCTAGAAGCTAGTGTTGCAATTCTGAGAAAGCTTACCGAGCAATTGAAGGAGTTATCTCTGAAACAATCTTCTCTTGATCCTTTAAGGGAAACTCTCAAGAGTTTTAGGCACAAGAATGAGAAAGAATTGGCTGGTGGAGAGGATGCTGCTCATCAAGCACTCCTCAAGGATGCAGACAAGTACTGTAAGGGAATTTTAGGAAGGGTATCTCGTGGCCATGGGTGCATGAAAAGTTTGACCTTTGCTGTCATTGCCGCTGTAGCTGTTGGTGCTGCACTCATGTCCCCAAACATGGAATCCTGGGATTTGAAGAAGCTGTCTGTAGTGTTCAGCTCCTCACCATCCTTCTGA 1527 44.79 MVAAAAADDHQVRSKSKHRSDDEDDDSDDEVAAENGQVQEKKVKKPKVKKPKVTVADAASKIDAADLAAFLVDVSASYESKEDILLMRFADYFGRAFSAVNSSQFPWMKMFRESTVAKIADVPLCHISDVVYKTSVDWINQRSSEALGSFVLWSLDCILSDLASQQAVTKGSKKGLQHASSKSQAAIFVVLAMVLRRKPDVLINLLPTLRENSKYQGQDKLSVIVWMVAQACQGDLAVGLYLWAHNILPIVNGKSSCNPQSRDLVLQLVERILSAPKARTILVNGAIRKGERLVPPSAFEILMRATFPASSARIKATERFEAVYPTLKEVALAGPAGSKAMKQASQQILTFTIKAAGESIPELSNETSSIFIWCLTQNPDCYKQWDRIYLDNLEASVAILRKLTEQLKELSLKQSSLDPLRETLKSFRHKNEKELAGGEDAAHQALLKDADKYCKGILGRVSRGHGCMKSLTFAVIAAVAVGAALMSPNMESWDLKKLSVVFSSSPSF* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4912272 4918899 + Vvi1g456 Vvi1g456 769656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g456 508 Coils Coil 390 413 - -
Vvi1g456 508 MobiDBLite consensus disorder prediction 1 49 - -
Vvi1g456 508 Pfam TMEM214, C-terminal, caspase 4 activator 11 476 IPR019308 -
Vvi1g456 508 PANTHER TRANSMEMBRANE PROTEIN 214-LIKE 4 503 - -
Vvi1g456 508 PANTHER TRANSMEMBRANE PROTEIN 214 4 503 IPR019308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g456 - - - vvi:100264607 899.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g456 . . . . . . . . Cmo04g01088 . Cma04g01010 Cma04g00064 Car04g00946 Car04g00061 Sed06g0178 . . Bhi07g00361 Tan04g1544 Cmetu10g1184 Lac13g1416 Hepe01g0553 . . Cla07g00573 Cam07g0600 Cec07g0669 Cco07g0640 Clacu07g0602 Cmu07g0639 Cre07g0975 . . . Cone9ag0416 Lsi04g01122 . . Cme10g01588 Blo06g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004619 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42