Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g458 ATGGTGGAGGTATTGTTGATGCCGCCTCACAACAGTCTGCTTCTGCGCAACTCAGAGCTTGCAATGGATTGTCATGATGGCATGTGCTCTTCCCTCCTGGCTTTACATGGTGATGCATCCTCTCACTTACTGTTGCAGGACAGAAATACAATAAACAGCAGCTCTCCTAGTCTTGGTGATGGTTATGTGGCATTGTTTGTTCGGATGCTTGGGCTAGATAATGATCCTCTTGATAGGGAACAGGCAGTAGTAGCATTGTGGAAATATTCACTTGGAGGAAAGCAGTATATTGATGCCATAATGCAATTCCGAGGCTGCTTAAATCTCACAGTAAATCTCCTTAAATCAGACTCCAGTTCTACTTGTGAAGCAGCTGCAGGCCTTCTACGAGAAATAGCTTCAATTAATCTACACAGAGAGTCAGTAGCAGAAAGTGGGGCAATAGAAGAGATAACTGGTTTGTTGAGGCATTCTTCCTTGACATCTGAGGTGAAGGAGCAAAGTATTTGTACTCTATGGAATCTGTCTGTAGATGAAAAGCTCAGAATGAAAATTGCTAACACTGATCTTCTGCCGCTAGTAATCAGGTCCCTGGAGGATGAGGATATTAAAGTGAAGGAGGCAGCTGGAGGGGTTTTGGCAAATTTGGCATTAAGCACATCTCTTCACAGCATCATGGTTGAAGCAGGTGTTATTCCAAAATTGGCAAAGCTTTTAAGAATTGATGTAGAAGGATCTAAAGTCATTAAAAAGGAAGCAAGAAATGCATTGTTGGAACTTGCTAAGGATGAATATAATAGAATTCTCATCGTTGAGGAGGGTCTGGTCATAGTGCCAATGATTGGTGCAGCTGCCTACAAGGCCTTGACACCAGGTTTGTACTCATGGCCTTCTTTACCTGATGGTACAAAGATCGAACAGAGTTCCAAAGCTCCCTCAAAGTATGGCGCCTCTGAATTACTCCTTGGATTGAATATTGATGACAAGAATGCTGAAATAGATAAAAGCAAGATAAATGCAGTAGTTGGGCGTACACAGCAACAGTTTCTTGCTCGTATTGGGGCTATAGAGGTGGAAGATGAAAGAAAATCCCAATCTGTATCCACAAGTCAGCGGTTTACACTTTTGCCATGGATGGATGGTGTTGCTCGGTTAGTTCTGATTCTTGGGCTTGAAGATGAGTTGGCCATTTCAAGAGCTGCAGAATCAATTGCTGATGCATCTATTAATGAGCATATGCGGATCTCATTCAAGGAAGCTGGAGCCATGAAGCATCTAGTTCGACTTTTAGACCATAATAATGATTCGGTTAGATTTGCTGTAACTTGTGCTTTGGAAAGGTTGTCTGTCAGCAACAGCATCTGCCAGCTAATCGAAGCTGAAGGTGTTATATATCCTTTACTTAATGCTCTGAAGCACTCAGGGACATCTGAAACTTTGATGGAAAAGACTTTGGATATTTTGGCACGGATTTTAGACCCTGGTAAAGAAATGAAATCAAAGTTTTATGAAGGACCAGTTAATGGATCAAAGAAGGGATTGAATGCAATGGGAAGGCCTGATGCCACTATTCAATTTGTTGGAAACATGGACGAGACAGCTGTATCAAAATCAACTACAGGGAAAGATGTCATGGACTCTGCCATCATTGCTTGCCTTGTTGAAATTTTAAAGACTCCATCCCCAAATTTGCAGAGAAAAGCATCTTCCATCCTTGAGTTCCTGACAATTATTGAGCCACACTTGGACACAATCCTTTCAGTAGACATTGAATCTGGTTTGGAAGCTGTTTTCCAACAGAAGATTTTGGACGATACAGAATCTGATATGGGTGATCAGCGGCCAGAACTACATGCCTTGAAAGTCGAAGAAGCCGGTCTCGCTATATCTGCTGCATCACGCTTACTGACAAAATTACTTGACTTTGTGCAGTTTCGCCAAACAATAAATGCTGCACGGTTCACAAAATTGCTACGTAAAACTCTCAGGTCAAATATTCCTCTTCACAACAAAGACTGGGTTGCAGCTTGCCTAGTTAAACTGAGTTCTTTGTCTGGTCCCAACCAAGATTTTGATGATCCAGTCAACCTGGAGGTAACTCTTTATGAGACTGTCCCAAGACTTGTTGAGCAGATCAAAACCTCTTTCTCTCCAGAAGCACAAGAAGCTGCTGTTATAGAACTCAACAGAATAATTTCGGAAGGGGTGGTGGATTCTACTCGTGCAGTTGCTGCTGAGGGAGGAATATTCCCATTAGTGAAGGTGATTGAAGAAGGGAGTGAGAGGGCTGTTGAAGCTGCCTTAGCTATACTGTATAATATAAGCATGGACAGTGAGAACCATTCGGCAATTATAGCTGCTGGAGCAATCCCAGCATTGAGGAGAATTGTTCTTTCACAAGGGCCACAGTGGATGCGAGCGCTTCATTTGCTGAGGACTTTGCCTACATGA 2451 42.59 MVEVLLMPPHNSLLLRNSELAMDCHDGMCSSLLALHGDASSHLLLQDRNTINSSSPSLGDGYVALFVRMLGLDNDPLDREQAVVALWKYSLGGKQYIDAIMQFRGCLNLTVNLLKSDSSSTCEAAAGLLREIASINLHRESVAESGAIEEITGLLRHSSLTSEVKEQSICTLWNLSVDEKLRMKIANTDLLPLVIRSLEDEDIKVKEAAGGVLANLALSTSLHSIMVEAGVIPKLAKLLRIDVEGSKVIKKEARNALLELAKDEYNRILIVEEGLVIVPMIGAAAYKALTPGLYSWPSLPDGTKIEQSSKAPSKYGASELLLGLNIDDKNAEIDKSKINAVVGRTQQQFLARIGAIEVEDERKSQSVSTSQRFTLLPWMDGVARLVLILGLEDELAISRAAESIADASINEHMRISFKEAGAMKHLVRLLDHNNDSVRFAVTCALERLSVSNSICQLIEAEGVIYPLLNALKHSGTSETLMEKTLDILARILDPGKEMKSKFYEGPVNGSKKGLNAMGRPDATIQFVGNMDETAVSKSTTGKDVMDSAIIACLVEILKTPSPNLQRKASSILEFLTIIEPHLDTILSVDIESGLEAVFQQKILDDTESDMGDQRPELHALKVEEAGLAISAASRLLTKLLDFVQFRQTINAARFTKLLRKTLRSNIPLHNKDWVAACLVKLSSLSGPNQDFDDPVNLEVTLYETVPRLVEQIKTSFSPEAQEAAVIELNRIISEGVVDSTRAVAAEGGIFPLVKVIEEGSERAVEAALAILYNISMDSENHSAIIAAGAIPALRRIVLSQGPQWMRALHLLRTLPT* 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4920368 4928008 + Vvi1g458 Vvi1g458 769658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g458 816 SMART arm_5 692 733 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 451 493 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 736 776 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 219 262 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 777 816 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 410 450 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 94 134 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 538 577 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 135 177 IPR000225 GO:0005515
Vvi1g458 816 SMART arm_5 178 218 IPR000225 GO:0005515
Vvi1g458 816 Gene3D - 48 289 IPR011989 -
Vvi1g458 816 SUPERFAMILY ARM repeat 628 803 IPR016024 -
Vvi1g458 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Vvi1g458 816 ProSiteProfiles HEAT repeat profile. 190 228 IPR021133 -
Vvi1g458 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 190 IPR000225 GO:0005515
Vvi1g458 816 SUPERFAMILY ARM repeat 63 577 IPR016024 -
Vvi1g458 816 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 38 816 - -
Vvi1g458 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 747 789 IPR000225 GO:0005515
Vvi1g458 816 Gene3D - 608 814 IPR011989 -
Vvi1g458 816 Pfam Armadillo/beta-catenin-like repeat 417 449 IPR000225 GO:0005515
Vvi1g458 816 Gene3D - 346 577 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g458 - - - vvi:100255981 1509.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30