Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g46 ATGGCTGTTTTAGTGTATTTTGTGCTTTTCCTGGCCATGACTGGCCATTCAAGTGCTGCTGTCTATTGTGTGTGTAAAGATGGGTTGAGTGACCAAGCTCTTCAGAAAACCTTGGATTATGCCTGTGGAGCTGGAGCTGACTGCTCCCCAGTTCTTCAAAATGGGGCTTGTTACAACCCCAACACTGTGAAGGATCACTGTAGTTATGCTGTTAACAGCTATTTCCAGAAGAAGGGTCAAGCTTCTGGGAGCTGTGATTTTGCAGGAACTGCTACCCAAAGTCAGACTAACCCTTCCAGCGTTTCAACTTGTGTTTATCCTACAAGTGCAAGGGTCTGTGATTAA 345 45.51 MAVLVYFVLFLAMTGHSSAAVYCVCKDGLSDQALQKTLDYACGAGADCSPVLQNGACYNPNTVKDHCSYAVNSYFQKKGQASGSCDFAGTATQSQTNPSSVSTCVYPTSARVCD* 115
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 523826 526024 - Vvi1g46 Vvi1g46 769246
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g46 114 SMART X8_cls 21 106 IPR012946 -
Vvi1g46 114 Pfam X8 domain 22 92 IPR012946 -
Vvi1g46 114 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1 1 111 - -
Vvi1g46 114 PANTHER BETA-1,3 GLUCANASE 1 111 IPR044788 -
Vvi1g46 114 Gene3D - 16 112 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi1g46 Vvi17g649 ECH
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g46 - - vvi:100242217 231.491