Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g46 ATGGCTGTTTTAGTGTATTTTGTGCTTTTCCTGGCCATGACTGGCCATTCAAGTGCTGCTGTCTATTGTGTGTGTAAAGATGGGTTGAGTGACCAAGCTCTTCAGAAAACCTTGGATTATGCCTGTGGAGCTGGAGCTGACTGCTCCCCAGTTCTTCAAAATGGGGCTTGTTACAACCCCAACACTGTGAAGGATCACTGTAGTTATGCTGTTAACAGCTATTTCCAGAAGAAGGGTCAAGCTTCTGGGAGCTGTGATTTTGCAGGAACTGCTACCCAAAGTCAGACTAACCCTTCCAGCGTTTCAACTTGTGTTTATCCTACAAGTGCAAGGGTCTGTGATTAA 345 45.51 MAVLVYFVLFLAMTGHSSAAVYCVCKDGLSDQALQKTLDYACGAGADCSPVLQNGACYNPNTVKDHCSYAVNSYFQKKGQASGSCDFAGTATQSQTNPSSVSTCVYPTSARVCD* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 523826 526024 - Vvi1g46 Vvi1g46 769246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g46 114 SMART X8_cls 21 106 IPR012946 -
Vvi1g46 114 Pfam X8 domain 22 92 IPR012946 -
Vvi1g46 114 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3-LIKE ISOFORM X1 1 111 - -
Vvi1g46 114 PANTHER BETA-1,3 GLUCANASE 1 111 IPR044788 -
Vvi1g46 114 Gene3D - 16 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g46 - - - vvi:100242217 231.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g46 Vvi17g649 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g46 Blo01g00452 Blo16g01090 . . . . . . Cmo04g01784 Cmo18g00599 . Cma18g01108 . Car18g01022 Sed06g1772 Cpe09g00219 Cpe01g01504 Bhi07g01497 Tan04g1010 Cmetu10g0153 Lac13g0372 Hepe10g1792 . . Cla05g02394 . . Cco05g2642 Clacu05g2571 Cmu05g2427 Cre05g2544 Cone13ag0909 Cone19ag0903 Cone6ag0530 Cone9ag0544 Lsi04g00365 . . Cme10g00360 . . . . . Bpe02g02316 Bma01g00121 Bma06g00735 . . . Cma04g01699 . Car04g01736 . . Cpe07g00085 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000407 3 5 2 5 4 4 7 5 3 3 3 4 5 4 3 6 4 7 7 4 4 4 3 3 3 4 4 4 5 2 124