Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g461 ATGGCGGCAAACAAGTTTGCAACTATGTTGCATCGAAACACGAACAAGATCACGCTTATTCTCATCTATGCTGTTCTCGAATGGATTCTGATCGTCCTTCTTCTTCTCAACTCTCTTTTCTCTTATCTAATCGTGAAATTTGCAGACTACTTCGGCCTCAAGAGACCCTGCCTCTGGTGTTCTAGGCTCGATCACATTTTTGAGCCTGAGAAGGGAAAGACTTCTTACAGAGGTCTTGTGTGTGAAACCCACGCTGCGGAGATTTCGAAACTGGGGTACTGTTCGAATCATCGGAAGTTGGCTGAATTGCAAGATATGTGTGAGGATTGCTCGTCCTCATCGCGGCCTGATTATTGGAATTTGATAACCGAAACTGGGATCGACGATGGCATTGACGAAGTCGATAATTCCGATAGAAGCAGATCGGATTTTGCGGCTGATCGATGCGAGGAAGATGAGGGGACTAATGGAAACAAGGGAAATCAGATACTTTCTGATGTTGATGCAAGCTCTGGAACAAGAGAAGAGGAGGCAGAGGAGGATTGTTCATATTCCGTATCTAATTTTGGTTGCAGGGAGACGATGGCTAGTGAAGATGATAAAGTGGAGATGATCGAAGATGCATCTATTAATATTCCGCCTCAGCATCTTGAGTATTACGTTGATCGTGATGATTTTCGATTGGTTCCGGTTGAGTTGATCGATTTCACTGCTGCCGATATCCAGAATGGGTACAGAACAGAGGACGTAGGTCAAGCAAACTGGGATCGCCGAGAAGTCATACTGGGTTCTGAATTTGGTGCAGAGGCGCAAATTGAATCAATTATGGAGAACAAATGCAGTCAAGGAAAGCCAGTGGCAGTAGAATTTTGTGCTCATGAGACTAAGGAGGAACCCGAACTGGAGTTTGCATTGGTTGAATCCATGGAGATAGATGAGAATGAGAATTCTTCGACTTTACGTGGTGAAGAAGGGGATTTAGTGTGGGAGGTATATCAACCTGTTGCCATTACTCAAGCAACTCAAACTCCATTTAATGATGTAGTTGATGTTCAAGAAACTGATGCAGCGGCCGGAGGAGAAAAGATTTCAGAAACTAATCCAGTGTTTCGGATGAGGATTGATGAAACTGAAGTAGAGATCTTGATAGGGACAGAGATGCCTGATCAGGCACCCACAGATAAGATTCGAGCTCAAGAAATTCTTCCTTCAGATCCTTGCATCCAGGAAGATCCATCGACTAGTTCTGCTAATTTGTATGCTGATGATGATCATTGTTCTGAGCAAGCTGAGGAAGAAACTTTGGAATGCAAAACCATGACAGTTGAGATAAGTGAGCAAGCAATAAACACTCATTTGTTGTGTACAGAGCTTAATGAAATTGAGGATGAAATTGAGGAAGCTAAAGTACCTAATTCACCCGCTTCTATTGAAGGTCCTACGCCAGCCGAGGAAGAAGCATTACAATGCAAAACCATACTTGTTGAGACAAGTGAGCAAGCTATAGACACTCATTTCTCAACATGTTTAGAGCTTAATGAAATCGAGGAGGAGAGAGTTCCCGATACACCCACTTCCATTGATGGGCTCAATCACTTACACAAGAGATTACTGCTCCTCGAGAAACGAGAATCAGGAACTGAAGAGTCTTTGGATGGTAGTGTCATAAGTGAGTTTGAAGGTGGTGATGTTGGTCTGACCGTTGAAAAGCTGAAATCAGCACTGAGGTCTGAACGAAAGGCTTCAAGTGTTTTATATGCAGAACTAGAAGAAGAAAGAAGTGCTTCCGCAGTAGCAGCCAATCAGACTATGGCAATGATAAATCGACTGCAGGAAGAGAAGGCAGCAATGCAGATGGAAGCTTTGCAGTACCAGAGAATGATGGAAGAACAATCTGAATATGACCAGGAAGCCTTGCAGCTTTTGAATGAGCTTATGATAAAGAGGGAAAAAGAGAAGCAAGAGCTAGAGAAAGAGCTGGAAATATATCGCAAGAAGGTCTTGGATTATGAGGCAAGAGAAAAAATGATGTTAAGAAGAATGAAAGAGGGTAGTGCCAGAAGCAGAACTTCCTCTGCATCTTGTAGCAATGAAGAAGATAGCTTATATGGATTTCGAGAAAGTGGCGACCACAACACCCCTGCTGATGCAGTTCTAAGTTTGGAGGAATCTTTGGCTACCTTTGAGGAAGAGAGGCTTTCCATTCTTGAGCAACTGAAGGTTTTAGAAGAGAAGCTTTTCACGTTGGCTGATGAGGAGGAACATGACCCTAACAATATGAAGCCAATTCAGCATTCCTATGAAGAGAATTGCAAAGATTTTGATGAGAATTGTGACCATAGCCCTGAAGCAAAGAGACTTCTTCCTCTTTTTGATGCAATTGTTGCAGAAACTGAAGATGGGTTATTGGATGGAAATGACATAGTATTTGACTCATTCCTCTTACAAGACTCGTCAGTCACCAAGTTTGATATAGAGAGTAAGAAGAATGCAATTGAAGAGGAGGTGGATAATCTCTATGAGAGGCTACAAGCTCTTGAGGCAGATAGGGAATTTCTAAAGCATTGCATAAGCTCCTTGAACAAAGGAGATAAGGGGATGGATCTTCTCCAGGAGATCTTACAACATCTTCGTGATCTGAGGAGTAGAATAGATTGGTCTTTTCAAGTTGATTTAACAGCAGTGAATTTGGACACGAGCACCCACCACTCTGCATTGATGAAATGA 2727 42.65 MAANKFATMLHRNTNKITLILIYAVLEWILIVLLLLNSLFSYLIVKFADYFGLKRPCLWCSRLDHIFEPEKGKTSYRGLVCETHAAEISKLGYCSNHRKLAELQDMCEDCSSSSRPDYWNLITETGIDDGIDEVDNSDRSRSDFAADRCEEDEGTNGNKGNQILSDVDASSGTREEEAEEDCSYSVSNFGCRETMASEDDKVEMIEDASINIPPQHLEYYVDRDDFRLVPVELIDFTAADIQNGYRTEDVGQANWDRREVILGSEFGAEAQIESIMENKCSQGKPVAVEFCAHETKEEPELEFALVESMEIDENENSSTLRGEEGDLVWEVYQPVAITQATQTPFNDVVDVQETDAAAGGEKISETNPVFRMRIDETEVEILIGTEMPDQAPTDKIRAQEILPSDPCIQEDPSTSSANLYADDDHCSEQAEEETLECKTMTVEISEQAINTHLLCTELNEIEDEIEEAKVPNSPASIEGPTPAEEEALQCKTILVETSEQAIDTHFSTCLELNEIEEERVPDTPTSIDGLNHLHKRLLLLEKRESGTEESLDGSVISEFEGGDVGLTVEKLKSALRSERKASSVLYAELEEERSASAVAANQTMAMINRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNELMIKREKEKQELEKELEIYRKKVLDYEAREKMMLRRMKEGSARSRTSSASCSNEEDSLYGFRESGDHNTPADAVLSLEESLATFEEERLSILEQLKVLEEKLFTLADEEEHDPNNMKPIQHSYEENCKDFDENCDHSPEAKRLLPLFDAIVAETEDGLLDGNDIVFDSFLLQDSSVTKFDIESKKNAIEEEVDNLYERLQALEADREFLKHCISSLNKGDKGMDLLQEILQHLRDLRSRIDWSFQVDLTAVNLDTSTHHSALMK* 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4953885 4958333 + Vvi1g461 Vvi1g461 769661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g461 908 Coils Coil 600 673 - -
Vvi1g461 908 PANTHER MYOSIN-BINDING PROTEIN 2 1 882 IPR039306 GO:0017022
Vvi1g461 908 Coils Coil 572 592 - -
Vvi1g461 908 Coils Coil 725 745 - -
Vvi1g461 908 PANTHER MYOSIN-BINDING PROTEIN 2 1 882 - -
Vvi1g461 908 MobiDBLite consensus disorder prediction 130 181 - -
Vvi1g461 908 MobiDBLite consensus disorder prediction 681 701 - -
Vvi1g461 908 MobiDBLite consensus disorder prediction 687 701 - -
Vvi1g461 908 MobiDBLite consensus disorder prediction 132 155 - -
Vvi1g461 908 Coils Coil 822 856 - -
Vvi1g461 908 Pfam Zein-binding 570 660 IPR007656 -
Vvi1g461 908 ProSiteProfiles GTD-binding domain profile. 566 664 IPR007656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g461 - - - vvi:100268019 1551.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g461 Vvi14g738 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38