Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g462 ATGAGCGACTCATTAGGCGCAGCCGCATTCATGATGAAACCCAAGAACTTCTTGCAGAATATAATGAAGCCCTTCAAATTCAGTTCCAGCAAAGAGGGACAGAAAGAGGAGGATTTGGAGAAGATCGCCGCCCAGGAACAGAAGCTATTCCCTTTCGAAACCCTAGTCGCAGCCACCAAAAATTTCCACCAGAAGCTCGGTGAAGGAGGTTTCGGTCCCGTCTTCAAGGGGAGGTTGGAGGATGGAAGAGAGATTGCTGTAAAGAAGCTGTCACAGAACTCGAATCAAGGGAAGAAAGAGTTTGAGAATGAGGCCAAGTTGTTGGCTCGTGTACAGCATCGAAATGTTGTAAATCTGTTAGGATATTGTACACGTGGTGCAGAGAAACTTCTTGTCTATGAGTACATCTCCAATGAAAGCCTTGACAAGTTTCTCTTCAAAACAGGTAGACGAGAGGAACTGGATTGGAAACGAAGGTATGACATAGTTGGAGGCATCGCACGGGGCTTGCTTTACCTTCATGAAGACTCCCATAGTTGCATAATCCATCGGGACATCAAGGCCAGCAATGTTCTACTAGATGATAAATGGGCCCCAAAAATTGCCGATTTTGGTATGGCACGTCTCTTTCCAGAAGACCAAACTCATGTCAACACCCGTGTAGCTGGCACCAATGGGTACATGGCTCCTGAGTATGTCATGCACGGACATCTTTCAGTGAAGGCAGACGTATTCAGTTTTGGGGTTTTGATTTTAGAGCTGATCAGTGGTCAGAAGAACTCCACATTTGATGTAAATCTTGATGCACAGAACCTACTTGAGTGGGCATGGAAACTTTACAAGAAAGGCCGAAGCTTGGAGGTTTTGGATCCCTCATTAGCATCATCTGCAGTTGCTGAGCAAGTAGCGATGTGTGTACAGATTGGTCTGCTGTGCACTCAAGCTGATCCACAGTCACGGCCCAACATGCGCCGTGTCGTGGTTATGCTATCAAAGAAACCAGGCACCCTGGAGGAGCCAACTAGACCTGGATACCCAGGTTCAAGATACAGAAGATCTCGTCGGCCTACAACATCAGCCTCCACAGCTGGAACTTCGGGTGAATCTTCACACACATTTGAATCTACCACAAATAGCGCCACTGCAACCACGTCAGGGGTGGCTAGCCCAAGATTAGACTCAAGAGGGAAACGTCCTGTGCAAGGTTAA 1209 47.31 MSDSLGAAAFMMKPKNFLQNIMKPFKFSSSKEGQKEEDLEKIAAQEQKLFPFETLVAATKNFHQKLGEGGFGPVFKGRLEDGREIAVKKLSQNSNQGKKEFENEAKLLARVQHRNVVNLLGYCTRGAEKLLVYEYISNESLDKFLFKTGRREELDWKRRYDIVGGIARGLLYLHEDSHSCIIHRDIKASNVLLDDKWAPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLILELISGQKNSTFDVNLDAQNLLEWAWKLYKKGRSLEVLDPSLASSAVAEQVAMCVQIGLLCTQADPQSRPNMRRVVVMLSKKPGTLEEPTRPGYPGSRYRRSRRPTTSASTAGTSGESSHTFESTTNSATATTSGVASPRLDSRGKRPVQG* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4966028 4973928 + Vvi1g462 Vvi1g462 769662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g462 402 Pfam Protein tyrosine and serine/threonine kinase 62 329 IPR001245 GO:0004672|GO:0006468
Vvi1g462 402 ProSiteProfiles Protein kinase domain profile. 60 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g462 402 SUPERFAMILY Protein kinase-like (PK-like) 47 351 IPR011009 -
Vvi1g462 402 PANTHER RECEPTOR-LIKE KINASE 12 383 - -
Vvi1g462 402 SMART serkin_6 60 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g462 402 MobiDBLite consensus disorder prediction 330 402 - -
Vvi1g462 402 MobiDBLite consensus disorder prediction 352 390 - -
Vvi1g462 402 Gene3D Phosphorylase Kinase; domain 1 24 135 - -
Vvi1g462 402 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 383 - -
Vvi1g462 402 CDD STKc_IRAK 66 332 - -
Vvi1g462 402 Gene3D Transferase(Phosphotransferase) domain 1 136 339 - -
Vvi1g462 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76507 PF07714 PK_Tyr_Ser-Thr 3.00E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g462 - - vvi:100249212 743.806