Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g463 ATGGCCACCGAAGAGCCCAATAACCCTCCCCAACCACCTTCTTCTATTCCCCAGTATTCAGAGATGATTATGGCGGCGATCGAGGCTCTGAACGACAAGGGCGGCTCCAACAAGTCCTCTATCTCCAAGTACATCGAGTCGACGTACGGAGATCTGCCGGCGGCTCACTCCACCCTGCTGGCGCACCACCTCAACAAGATGAAACAGAGCGGCGACCTCGTTATGGTCAAGAACAACTACATGAAGCCCGACCCTAACGCGCCGCCGCGGAGGGGTCGCGGCCGTCCTCCCAAGCCCAAGGTTCCTCTTCCTCCAGGAACCGTTCTCGCGCCGCCGAGGCCCAGGGGCCGTCCGCCAAAGCCCAGAGATCCATTTGCTCCGGTCTCTCCGCCGAAGAAGGCTTCCTCAGGAAGTGGAAAGCCACGCGGACGTCCTCCAAAGAAGCCCAAGGTGGGAACTTCGTCGGCCCCAGCGCCGGCGACTGGGGCACCGAGGCCCAGGGGGCGGCCGCCAAAGGTGAAGCCGGCGGTGGTTCCTGTTGGTTGTTGA 549 62.11 MATEEPNNPPQPPSSIPQYSEMIMAAIEALNDKGGSNKSSISKYIESTYGDLPAAHSTLLAHHLNKMKQSGDLVMVKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLAPPRPRGRPPKPRDPFAPVSPPKKASSGSGKPRGRPPKKPKVGTSSAPAPATGAPRPRGRPPKVKPAVVPVGC* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4981756 4983176 + Vvi1g463 Vvi1g463 769663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g463 182 MobiDBLite consensus disorder prediction 73 182 - -
Vvi1g463 182 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677
Vvi1g463 182 PRINTS AT-hook-like domain signature 110 121 IPR017956 GO:0003677
Vvi1g463 182 PRINTS AT-hook-like domain signature 137 147 IPR017956 GO:0003677
Vvi1g463 182 PRINTS High mobility group protein (HMGY) signature 88 100 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g463 182 PRINTS High mobility group protein (HMGY) signature 103 114 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g463 182 PRINTS High mobility group protein (HMGY) signature 114 125 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g463 182 PRINTS High mobility group protein (HMGY) signature 128 147 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vvi1g463 182 SMART h15plus2 13 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g463 182 Gene3D - 13 89 IPR036388 -
Vvi1g463 182 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Vvi1g463 182 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Vvi1g463 182 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Vvi1g463 182 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Vvi1g463 182 PANTHER HMG-Y-RELATED PROTEIN A 1 180 IPR031059 GO:0003677|GO:0005634
Vvi1g463 182 MobiDBLite consensus disorder prediction 98 128 - -
Vvi1g463 182 Pfam linker histone H1 and H5 family 17 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g463 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g463 182 SUPERFAMILY Winged helix DNA-binding domain 10 91 IPR036390 -
Vvi1g463 182 PANTHER HISTONE H1 1 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g463 - - - vvi:100244042 219.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g463 . . . . . . . . . . . . . . . . Cpe01g01840 . . . . . . . . . . . . . . Cone13ag0745 . Cone6ag0385 Cone9ag0412 . Csa05g02012 . . . . . . . . . . . . Cmo15g01006 . Cma15g00964 . Car15g00911 Cpe13g00360 . Bhi12g00922 . . . . . . Cla01g00621 Cam01g0649 Cec01g0642 Cco01g0667 Clacu01g0637 Cmu01g0611 Cre09g1891 Lsi09g00671 . Chy09g00839 Cme09g01371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001668 2 2 1 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 70