Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g465 ATGATAATCGGAGATGGGAAAGATGCTACCATTGTCACCGGCAATAAGAATGTTCAAGATGGCTCCACAACTTTCCGTTCTGCCACTTTCGCTGTTTCGGGTCATGGCTTCATTGCTCGAGATATGACATTTGAAAACACGGCTGGACCTGAGAAACACCAAGCAGTTGCACTTCGCTCAAGCTCGGATGGTTCGGTTTTCTATGGTTGTAGCTTTAAAGGCTACCAAGACACCTTATATGTGCACACACAACGCCAATTCTACCGCAGCTGCGATGTATATGGAACTGTGGACTTCATCTTTGGAGATGCAGTTGCGGTTCTCCAGAACTGCAACATCTACGTGAGGAGACCCATGAGCAACCAAGCAAACGTCATCACCGCTCAGGGAAGATCCGATCAAAATGAAAATACTGGGATTTCAATCCATAATTCGCATTATTAA 444 45.5 MIIGDGKDATIVTGNKNVQDGSTTFRSATFAVSGHGFIARDMTFENTAGPEKHQAVALRSSSDGSVFYGCSFKGYQDTLYVHTQRQFYRSCDVYGTVDFIFGDAVAVLQNCNIYVRRPMSNQANVITAQGRSDQNENTGISIHNSHY* 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5011823 5018047 - Vvi1g465 Vvi1g465 769665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g465 147 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vvi1g465 147 PANTHER PECTINESTERASE 1 146 - -
Vvi1g465 147 Pfam Pectinesterase 1 146 IPR000070 GO:0030599|GO:0042545
Vvi1g465 147 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 1 146 - -
Vvi1g465 147 Gene3D - 1 147 IPR012334 -
Vvi1g465 147 SUPERFAMILY Pectin lyase-like 1 145 IPR011050 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g465 - K01051 vvi:104880150 297.36