Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g467 ATGATACTCTTGCAGTCTCCTTCCAGATTTCTTCTGCAAACCTTGTTAAATCGGGTTCAGAATCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGGTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACTCCAGCTCAAGAGGCAGTTTTCTCTGGTGGGCTTCCCTTTGGAGCCATAGAAGCAATAAAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGAGTATAAACATGCTCTCTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTACTGGGTGCCCCACTAAGGGTAGTGCTAAAACATCTTGCTTCAAGGACTGTTGCTCCAGATATCAATCGGCCTTTTGCCCTTGTACATCGGCCGAAGGAGTCCTTTTTTCTTGTTCCTCAGGCTGAAAAGGTTACTGTTGTGTTTCCTATGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAGGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAGCTTTATCTGCAAATGCAGGATTCGTTACTTTTGTCATTTTCCCACGCCACGTGGAAGGCAAAAAACTGGACCGAACTGTTTGGAGTTTATCAACATTTCGTGCATATGTTAGTTATCATGTTAAGTGCTCAGAGGGTTTCATGCACACTCGGATGAGACGTCGCGTGGAGTCCCTTATTCAGGCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAG 987 44.07 MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPTPAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLVKIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMRFKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFVIFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPDLEKSKKTVQGRSFKRLSLKEAHTNSNSQRWS* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5030549 5057195 + Vvi1g467 Vvi1g467 769667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g467 328 MobiDBLite consensus disorder prediction 298 328 - -
Vvi1g467 328 Gene3D - 139 313 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi1g467 328 SUPERFAMILY Arp2/3 complex subunits 135 297 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi1g467 328 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 1 313 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Vvi1g467 328 Gene3D - 1 138 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi1g467 328 MobiDBLite consensus disorder prediction 298 315 - -
Vvi1g467 328 SUPERFAMILY Arp2/3 complex subunits 1 129 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Vvi1g467 328 Pfam Arp2/3 complex, 34 kD subunit p34-Arc 73 297 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g467 K05758 ARPC2; actin related protein 2/3 complex, subunit 2 - vvi:100261170 649.818
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g467 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005950 1 0 1 1 0 0 1 2 1 0 1 2 1 1 1 1 1 0 2 1 1 1 2 2 3 1 0 1 3 1 33