Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g47 ATGGCGTCCCAAATGGCGATCCTCTCCAGAGCCCGTAAAACCCTCCTCAAAACCCTAAACCACCACAATAATCCCTTTAAAGCTTCCATTTCCACCTTCACATTCCTCTCCCAGGAACCCCAACTGGCCGAGCCCAGCCTCCCCCCGCCATCTCCCACTCCACTTCCTCCCAACCCCGCCTCAGGGAGCCCGCTCTACAACGAGAACTGGCGGAGCCCCATCCCCCAGGCTCAGTCCATCATTCCTCTAGGATTTCTGCACCAGTCCTCTTCGTCGCGGCTGCAGGCGCTGTCGCAGACGCTGGATGTGCCGAGCCTGATGAACGTGTTCGCCGACTGGATGACGTCGCAGCGGTGGGCGGATATGAATCAGCTGTTCGAGTTTTGGATTAGGTCGCTTGATAAGAATGGGAAGCCGAATAAGCCGGATGTGAACTTGTATAACCATTACTTGAGGGCGAAGTTGATGATCGGCGCCTCGGCTGGGGAGCTGCTGGATCTGGTGGCGCAGATGGAGGACTACGCCATCATTCCTAATACGGCGTCGTTTAATTTAGTGTTGAAGGCAATGTATCAAGCCAGAGAGACCGAGGCCGCCGAGAAGTTGTTTCAGCGGATGCTGCAGACAGGAAAGGAATCTATGCCTGATGATGAGTCATATGAATTGGTTGTTGGTATGCTGTTTTTGACAGACCAGATTGATGCTGCCTTGAGATATGTTGATTTGACTTTGAAATCTGGTTATATGTTGTCAATGAGGGTTTTTGCTGAGTGTGTGAGAAGTTGTGTTAACAAAGGCAGGCTGGATGCTTTGGTGTCTATTATAGAGAGGTGCAAGACAATGGATCAGAATAAAGCTCTTTCTCCCTCCTGGAACATGTGCATCTTCATTGCAGATATTGCGATGCAAGAGGATAATAGCAAATTAGCTTTTTATGCCCTGGAATTCATGGCCAGATGGATTGCTCGGGGTGAGAATGCAAGGGGCCCTGTTCTACTCTCTGTGGATGAGGGGCTTGTTGTATCAGCACTTGGAACTGCTGGTAGGACTTACAGTTCTACTCTTCTAGATGCATCATGGGCGATCCTACGACGATCATTGCGTCAAAAGAAGGCACCTCAACCAGAATCTTATCTTGCAAAAATATATGCCGATGCAGCATTGGGGAATTTGCAGAGAGCATTCAGCACTCTGCATGAGTTTGAAACCGCTTATAGGAACTCCCCCAAAGAAGCAGAAGAGGACATATTCTCACCTTTTACATCTTTACATCCTTTGGTAATGGCAAGCTCCAAGAAGGGTTTTGAAACTTTGGACACGGTTTATTTTCAATTGGAGAATCTGAGCCGTGCAGACCCTCCTTACAAGTCTGTTGCTGCTCTGAATTGTGTTATTTTAGGTTGTGCGAATATATGGGACCTTGACAGGGCCTACCAGACTTTTGAGGCAATTGGTTCTTCTTTTGGATTGACCCCTGATATACATTCATACAATGCTTTGATGTATGCATTTGGAAAGCTCAAGAAGACATTTGAAGCTTCAAGGGTGTTTGAGCACTTAACCAGTCTGGGCATAAAACCAAATGCAATGTCATTTTCATTGCTTGTGGATGCTCATCTCATCAACCGAGATCAAAAAGCTGCTCTCTCTGTGATTGAAGAGATGATAAATGCTGGATTTGCACCATCGAAAGAGATACTTAAAAAGGTGAGAAGACGATGCATTAGGGAAATGGACTACGAGAGTAATGACCAGGTGGAGTCCCTGGCGAGAAAGTTTAAGATCCGTATGGGCACAGAAAATCGCAGAGACATGCTGTTCAACCTTGCGTACAACACCGAGTATGCTTGA 1851 47.33 MASQMAILSRARKTLLKTLNHHNNPFKASISTFTFLSQEPQLAEPSLPPPSPTPLPPNPASGSPLYNENWRSPIPQAQSIIPLGFLHQSSSSRLQALSQTLDVPSLMNVFADWMTSQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLMIGASAGELLDLVAQMEDYAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTGKESMPDDESYELVVGMLFLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKALSPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLLSVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKLKKTFEASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKKVRRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 529829 543820 + Vvi1g47 Vvi1g47 769247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g47 616 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g47 616 Pfam PPR repeat 182 208 IPR002885 -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vvi1g47 616 MobiDBLite consensus disorder prediction 43 61 - -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi1g47 616 Pfam Pentatricopeptide repeat domain 515 563 IPR002885 -
Vvi1g47 616 Gene3D Tetratricopeptide repeat domain 338 606 IPR011990 GO:0005515
Vvi1g47 616 Gene3D Tetratricopeptide repeat domain 106 321 IPR011990 GO:0005515
Vvi1g47 616 TIGRFAM PPR: pentatricopeptide repeat domain 495 529 IPR002885 -
Vvi1g47 616 PANTHER OS07G0599000 PROTEIN 1 616 IPR044605 -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g47 - - - vvi:100249185 1173.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g47 Blo01g00451 . Bda01g02129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02317 Bma01g00120 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006611 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38