Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g47 | ATGGCGTCCCAAATGGCGATCCTCTCCAGAGCCCGTAAAACCCTCCTCAAAACCCTAAACCACCACAATAATCCCTTTAAAGCTTCCATTTCCACCTTCACATTCCTCTCCCAGGAACCCCAACTGGCCGAGCCCAGCCTCCCCCCGCCATCTCCCACTCCACTTCCTCCCAACCCCGCCTCAGGGAGCCCGCTCTACAACGAGAACTGGCGGAGCCCCATCCCCCAGGCTCAGTCCATCATTCCTCTAGGATTTCTGCACCAGTCCTCTTCGTCGCGGCTGCAGGCGCTGTCGCAGACGCTGGATGTGCCGAGCCTGATGAACGTGTTCGCCGACTGGATGACGTCGCAGCGGTGGGCGGATATGAATCAGCTGTTCGAGTTTTGGATTAGGTCGCTTGATAAGAATGGGAAGCCGAATAAGCCGGATGTGAACTTGTATAACCATTACTTGAGGGCGAAGTTGATGATCGGCGCCTCGGCTGGGGAGCTGCTGGATCTGGTGGCGCAGATGGAGGACTACGCCATCATTCCTAATACGGCGTCGTTTAATTTAGTGTTGAAGGCAATGTATCAAGCCAGAGAGACCGAGGCCGCCGAGAAGTTGTTTCAGCGGATGCTGCAGACAGGAAAGGAATCTATGCCTGATGATGAGTCATATGAATTGGTTGTTGGTATGCTGTTTTTGACAGACCAGATTGATGCTGCCTTGAGATATGTTGATTTGACTTTGAAATCTGGTTATATGTTGTCAATGAGGGTTTTTGCTGAGTGTGTGAGAAGTTGTGTTAACAAAGGCAGGCTGGATGCTTTGGTGTCTATTATAGAGAGGTGCAAGACAATGGATCAGAATAAAGCTCTTTCTCCCTCCTGGAACATGTGCATCTTCATTGCAGATATTGCGATGCAAGAGGATAATAGCAAATTAGCTTTTTATGCCCTGGAATTCATGGCCAGATGGATTGCTCGGGGTGAGAATGCAAGGGGCCCTGTTCTACTCTCTGTGGATGAGGGGCTTGTTGTATCAGCACTTGGAACTGCTGGTAGGACTTACAGTTCTACTCTTCTAGATGCATCATGGGCGATCCTACGACGATCATTGCGTCAAAAGAAGGCACCTCAACCAGAATCTTATCTTGCAAAAATATATGCCGATGCAGCATTGGGGAATTTGCAGAGAGCATTCAGCACTCTGCATGAGTTTGAAACCGCTTATAGGAACTCCCCCAAAGAAGCAGAAGAGGACATATTCTCACCTTTTACATCTTTACATCCTTTGGTAATGGCAAGCTCCAAGAAGGGTTTTGAAACTTTGGACACGGTTTATTTTCAATTGGAGAATCTGAGCCGTGCAGACCCTCCTTACAAGTCTGTTGCTGCTCTGAATTGTGTTATTTTAGGTTGTGCGAATATATGGGACCTTGACAGGGCCTACCAGACTTTTGAGGCAATTGGTTCTTCTTTTGGATTGACCCCTGATATACATTCATACAATGCTTTGATGTATGCATTTGGAAAGCTCAAGAAGACATTTGAAGCTTCAAGGGTGTTTGAGCACTTAACCAGTCTGGGCATAAAACCAAATGCAATGTCATTTTCATTGCTTGTGGATGCTCATCTCATCAACCGAGATCAAAAAGCTGCTCTCTCTGTGATTGAAGAGATGATAAATGCTGGATTTGCACCATCGAAAGAGATACTTAAAAAGGTGAGAAGACGATGCATTAGGGAAATGGACTACGAGAGTAATGACCAGGTGGAGTCCCTGGCGAGAAAGTTTAAGATCCGTATGGGCACAGAAAATCGCAGAGACATGCTGTTCAACCTTGCGTACAACACCGAGTATGCTTGA | 1851 | 47.33 | MASQMAILSRARKTLLKTLNHHNNPFKASISTFTFLSQEPQLAEPSLPPPSPTPLPPNPASGSPLYNENWRSPIPQAQSIIPLGFLHQSSSSRLQALSQTLDVPSLMNVFADWMTSQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLMIGASAGELLDLVAQMEDYAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTGKESMPDDESYELVVGMLFLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKALSPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLLSVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKLKKTFEASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKKVRRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA* | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 529829 | 543820 | + | Vvi1g47 | Vvi1g47 | 769247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g47 | 616 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
Vvi1g47 | 616 | Pfam | PPR repeat | 182 | 208 | IPR002885 | - | |
Vvi1g47 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 528 | 562 | IPR002885 | - | |
Vvi1g47 | 616 | MobiDBLite | consensus disorder prediction | 43 | 61 | - | - | |
Vvi1g47 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 179 | 213 | IPR002885 | - | |
Vvi1g47 | 616 | Pfam | Pentatricopeptide repeat domain | 515 | 563 | IPR002885 | - | |
Vvi1g47 | 616 | Gene3D | Tetratricopeptide repeat domain | 338 | 606 | IPR011990 | GO:0005515 | |
Vvi1g47 | 616 | Gene3D | Tetratricopeptide repeat domain | 106 | 321 | IPR011990 | GO:0005515 | |
Vvi1g47 | 616 | TIGRFAM | PPR: pentatricopeptide repeat domain | 495 | 529 | IPR002885 | - | |
Vvi1g47 | 616 | PANTHER | OS07G0599000 PROTEIN | 1 | 616 | IPR044605 | - | |
Vvi1g47 | 616 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 493 | 527 | IPR002885 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g47 | - | - | vvi:100249185 | 1173.69 |