Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g47 ATGGCGTCCCAAATGGCGATCCTCTCCAGAGCCCGTAAAACCCTCCTCAAAACCCTAAACCACCACAATAATCCCTTTAAAGCTTCCATTTCCACCTTCACATTCCTCTCCCAGGAACCCCAACTGGCCGAGCCCAGCCTCCCCCCGCCATCTCCCACTCCACTTCCTCCCAACCCCGCCTCAGGGAGCCCGCTCTACAACGAGAACTGGCGGAGCCCCATCCCCCAGGCTCAGTCCATCATTCCTCTAGGATTTCTGCACCAGTCCTCTTCGTCGCGGCTGCAGGCGCTGTCGCAGACGCTGGATGTGCCGAGCCTGATGAACGTGTTCGCCGACTGGATGACGTCGCAGCGGTGGGCGGATATGAATCAGCTGTTCGAGTTTTGGATTAGGTCGCTTGATAAGAATGGGAAGCCGAATAAGCCGGATGTGAACTTGTATAACCATTACTTGAGGGCGAAGTTGATGATCGGCGCCTCGGCTGGGGAGCTGCTGGATCTGGTGGCGCAGATGGAGGACTACGCCATCATTCCTAATACGGCGTCGTTTAATTTAGTGTTGAAGGCAATGTATCAAGCCAGAGAGACCGAGGCCGCCGAGAAGTTGTTTCAGCGGATGCTGCAGACAGGAAAGGAATCTATGCCTGATGATGAGTCATATGAATTGGTTGTTGGTATGCTGTTTTTGACAGACCAGATTGATGCTGCCTTGAGATATGTTGATTTGACTTTGAAATCTGGTTATATGTTGTCAATGAGGGTTTTTGCTGAGTGTGTGAGAAGTTGTGTTAACAAAGGCAGGCTGGATGCTTTGGTGTCTATTATAGAGAGGTGCAAGACAATGGATCAGAATAAAGCTCTTTCTCCCTCCTGGAACATGTGCATCTTCATTGCAGATATTGCGATGCAAGAGGATAATAGCAAATTAGCTTTTTATGCCCTGGAATTCATGGCCAGATGGATTGCTCGGGGTGAGAATGCAAGGGGCCCTGTTCTACTCTCTGTGGATGAGGGGCTTGTTGTATCAGCACTTGGAACTGCTGGTAGGACTTACAGTTCTACTCTTCTAGATGCATCATGGGCGATCCTACGACGATCATTGCGTCAAAAGAAGGCACCTCAACCAGAATCTTATCTTGCAAAAATATATGCCGATGCAGCATTGGGGAATTTGCAGAGAGCATTCAGCACTCTGCATGAGTTTGAAACCGCTTATAGGAACTCCCCCAAAGAAGCAGAAGAGGACATATTCTCACCTTTTACATCTTTACATCCTTTGGTAATGGCAAGCTCCAAGAAGGGTTTTGAAACTTTGGACACGGTTTATTTTCAATTGGAGAATCTGAGCCGTGCAGACCCTCCTTACAAGTCTGTTGCTGCTCTGAATTGTGTTATTTTAGGTTGTGCGAATATATGGGACCTTGACAGGGCCTACCAGACTTTTGAGGCAATTGGTTCTTCTTTTGGATTGACCCCTGATATACATTCATACAATGCTTTGATGTATGCATTTGGAAAGCTCAAGAAGACATTTGAAGCTTCAAGGGTGTTTGAGCACTTAACCAGTCTGGGCATAAAACCAAATGCAATGTCATTTTCATTGCTTGTGGATGCTCATCTCATCAACCGAGATCAAAAAGCTGCTCTCTCTGTGATTGAAGAGATGATAAATGCTGGATTTGCACCATCGAAAGAGATACTTAAAAAGGTGAGAAGACGATGCATTAGGGAAATGGACTACGAGAGTAATGACCAGGTGGAGTCCCTGGCGAGAAAGTTTAAGATCCGTATGGGCACAGAAAATCGCAGAGACATGCTGTTCAACCTTGCGTACAACACCGAGTATGCTTGA 1851 47.33 MASQMAILSRARKTLLKTLNHHNNPFKASISTFTFLSQEPQLAEPSLPPPSPTPLPPNPASGSPLYNENWRSPIPQAQSIIPLGFLHQSSSSRLQALSQTLDVPSLMNVFADWMTSQRWADMNQLFEFWIRSLDKNGKPNKPDVNLYNHYLRAKLMIGASAGELLDLVAQMEDYAIIPNTASFNLVLKAMYQARETEAAEKLFQRMLQTGKESMPDDESYELVVGMLFLTDQIDAALRYVDLTLKSGYMLSMRVFAECVRSCVNKGRLDALVSIIERCKTMDQNKALSPSWNMCIFIADIAMQEDNSKLAFYALEFMARWIARGENARGPVLLSVDEGLVVSALGTAGRTYSSTLLDASWAILRRSLRQKKAPQPESYLAKIYADAALGNLQRAFSTLHEFETAYRNSPKEAEEDIFSPFTSLHPLVMASSKKGFETLDTVYFQLENLSRADPPYKSVAALNCVILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSYNALMYAFGKLKKTFEASRVFEHLTSLGIKPNAMSFSLLVDAHLINRDQKAALSVIEEMINAGFAPSKEILKKVRRRCIREMDYESNDQVESLARKFKIRMGTENRRDMLFNLAYNTEYA* 617
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 529829 543820 + Vvi1g47 Vvi1g47 769247
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g47 616 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g47 616 Pfam PPR repeat 182 208 IPR002885 -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vvi1g47 616 MobiDBLite consensus disorder prediction 43 61 - -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi1g47 616 Pfam Pentatricopeptide repeat domain 515 563 IPR002885 -
Vvi1g47 616 Gene3D Tetratricopeptide repeat domain 338 606 IPR011990 GO:0005515
Vvi1g47 616 Gene3D Tetratricopeptide repeat domain 106 321 IPR011990 GO:0005515
Vvi1g47 616 TIGRFAM PPR: pentatricopeptide repeat domain 495 529 IPR002885 -
Vvi1g47 616 PANTHER OS07G0599000 PROTEIN 1 616 IPR044605 -
Vvi1g47 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g47 - - vvi:100249185 1173.69