Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g476 ATGGGGGGAGCAGAGGAAGAGCTGGAGAGGAGGAGCAAGTTCCTCAGCAGTCTCATACAGAAGAAGAAAGCCACAGAGCAGCATGATCATCTCAACGTCCGCGTCAGAGCCTCCGACATGCCTCTTGCTTTGCAGAGCCGCGCCTTCAAATGTGCCCGTGACAACCTTGACGCCATGCCTGGAAAGCTCGACAGTAAACGCCTCGCTCTTGCGCTTAAGAAAGAGTTTGATTCATTATATGGTCCTGCTTGGCATTGCATTGTAGGAACTAGCTTTGGCTCATATGTCACGCATTCCCTTGGAGGTTTCCTGTATTTTTCAATTGACAAAGTCTACATCCTTCTCTTCAAGACTGCCGTCGAGCCTCTAGACCATTAA 378 49.74 MGGAEEELERRSKFLSSLIQKKKATEQHDHLNVRVRASDMPLALQSRAFKCARDNLDAMPGKLDSKRLALALKKEFDSLYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH* 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5131459 5135169 + Vvi1g476 Vvi1g476 769676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g476 125 SUPERFAMILY DLC 27 118 IPR037177 GO:0007017|GO:0030286
Vvi1g476 125 SMART Dynein_light_2 28 118 IPR001372 GO:0007017|GO:0030286
Vvi1g476 125 Pfam Dynein light chain type 1 33 118 IPR001372 GO:0007017|GO:0030286
Vvi1g476 125 PANTHER DYNEIN LIGHT CHAIN 1 124 IPR001372 GO:0007017|GO:0030286
Vvi1g476 125 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 21 119 IPR037177 GO:0007017|GO:0030286
Vvi1g476 125 PANTHER DYNEIN LIGHT CHAIN 1 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g476 K10418 DYNLL; dynein light chain LC8-type - vvi:100245790 253.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g476 Blo01g00767 Blo16g00740 Bda01g01803 Bda11g00179 Bpe13g01017 . . . . . . . . Car04g00094 . . Cpe01g01836 . . . . . . . . . . . . . . . . Cone6ag0379 Cone9ag0408 . Csa05g02007 . . . . . Bda11g00179 . Bpe02g01979 Bma01g00479 Bma06g01124 . . Cmo15g01017 . . . Car15g00917 Cpe13g00356 . Bhi12g00928 . . . . . . Cla01g00625 Cam01g0654 Cec01g0646 Cco01g0671 Clacu01g0642 Cmu01g0617 Cre09g1887 Lsi09g00676 . Chy09g00834 Cme09g01366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007497 2 1 2 2 2 1 2 0 0 1 0 1 1 1 1 1 1 2 2 0 1 1 1 1 1 1 1 1 1 3 35