Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g477 ATGAAGAATTCACATATTGTGGAGAACAAAGAACACGAGGCTGTTAATGGGTCTATGCTAAGGGGGGCAGTTCTGCCTTCACTTGGTCATTCGCAAAAGGAGCTTACTATCCAGGAGGTTGAGCGAGGGCCGCCCCATGAGGCTTTGCTTCTCGTCTTAGCTTACCTTCCTTTATTTGAGCTGCTCAACATGAGTGAAGTTTGCAGGTCACTGAGAGATGCAGTGGACAAAGATGTGTTGCAGTGGCTGGATATCATCGTGGAAAAGCCTTTGAACATGCTGTTTTCTGATGAGATTATGATCAAACTTACCTCGAAGGCGAATGGTAGGTTGAGAACTTTGGCTCTGATGAGCTGCACCAAGATTACAGATGATGGACTTCAACAGGTTATAGAGAAAAATCCCCTTATTAACAGGCTCTATTTGCCAGCATGCACTGGCCTAACTCCTGAGGGCATCATGAGAGCAGTGAAGACGCTAACCGAACATTATCAAGCTTTAAAGTGTGTAAGGATAAATGGTGTCTACAACATGAAGAAAGAACATCTTGAAACACTTAGCTCCTACCTTCAAATGAACCCGGCAAAGATGGAGGGGCAAATGCAGCAGCTTTGCTTCTTTCATGACCATAGAAACATCTCAGTTCTCATTTCCAGAACTGATAGGGCTCTGGAATCAGCCATTTTCATTCTGAGAGTTTTCATGAGCCATTGA 714 44.26 MKNSHIVENKEHEAVNGSMLRGAVLPSLGHSQKELTIQEVERGPPHEALLLVLAYLPLFELLNMSEVCRSLRDAVDKDVLQWLDIIVEKPLNMLFSDEIMIKLTSKANGRLRTLALMSCTKITDDGLQQVIEKNPLINRLYLPACTGLTPEGIMRAVKTLTEHYQALKCVRINGVYNMKKEHLETLSSYLQMNPAKMEGQMQQLCFFHDHRNISVLISRTDRALESAIFILRVFMSH* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5136640 5138777 + Vvi1g477 Vvi1g477 769677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g477 237 Gene3D - 43 81 - -
Vvi1g477 237 ProSiteProfiles F-box domain profile. 45 85 IPR001810 GO:0005515
Vvi1g477 237 PANTHER F-BOX PROTEIN SKIP28 34 208 - -
Vvi1g477 237 Pfam F-box domain 45 80 IPR001810 GO:0005515
Vvi1g477 237 Gene3D Ribonuclease Inhibitor 82 192 IPR032675 -
Vvi1g477 237 SMART fbox_2 44 84 IPR001810 GO:0005515
Vvi1g477 237 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 34 208 - -
Vvi1g477 237 SUPERFAMILY F-box domain 45 88 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g477 - - - vvi:100268116 426.402
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28