Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g479 ATGGATCCGAACCCGAGACCATCTTCTAGGGCTTACCAGCTTCACCCTGCCCGATCCTCCATCGTCGACCTCTTCAATCTTTACTTAGGAAGAAGTTCCCACCAAAAACCTGAGGATTCAAATCGGGAACCTCCGAACAAGACACAAAAGCGTGTAACTGCTCTAAACAGAGAGCTTCCTCCTCGAAATGAGCAGTTTCTTTTAGATTTTGGGCAGCTCCAGAGCCAGTTTTCTGACCAGGATCAATTGCGTTCGGTGACAGAATCTATCCTTATATCTCTGGTTGTGCCTTGTAGTGGTCATGCACCACGGGCTGAATTTCTTCTCTTTGCTTTACGGAGCTTGTGCAGCATAGGATACATAAACTGGGACACGTTTTTGCCATCCCTTCTTTCCTCAGTTTCTTCTGCAGAGATGTCAGTTGGTCAGGGGAATCAAGCAGTGACTTCTGTCTCATCTACGAGTTTGTCACCATCTGGGATGTTGCCATCTTCAAGCACAATTCACAATTCTTCCACTTTTCAGTCATCAAATCCTGCATCACCATTGCCTTCAGTTCATGGTATCAGCTCTCCTGCGCAGTCAGCGACTGATCCATCACCTTGTGTGGCCTTGTCACCTGTTAAATCCTCCGATATTTCCTGCAGTGGACAGCAACAACAGGAATCTGATGTTGCAAAATCATGGAGACCTGACAAGGCTCTAATTGAATGGCTGCATAGTTGTTTGGATGTGATTTGGCTGAGGAGAGATATGATGGCTATGCACATGCAAATGCTAGATCAACATCTTCAGTGCCCTACATTTGGAACTCATCGTTTTCTGTCACAGACAACTTCTCCTATTTCAGGTGAAGCGGTAGCCAACTTGCGATATTCACCAATCATGTATCCAAGTGTGCTAGGAGAACCTTTGCATGGAGAGGATCTTGCAAATTCTATTCAGAGAGGGAGTCTGGATTGGGAGAGGGCTTTGCGTTGTATAAGACACGCTCTTCGAACTACTCCATCACCTGACTGGTGGAAGCGTGTGCTGCTTGTGGCTCCTTGTTATAGGTCTCATCCTCAAGGACCTTCTGCTGGTGCTGTTTTTACTTCTGAAATGATTTGTGAGGCAACAATTGATAGAATCGTTGAACTATTGAAGTTGACAAATTCAGATATAAATTGCTGGCAGGAGTGGCTTGTATTTTCAGATATATTCTTTTTTCTTATGAAAAATGGATGCATTGATTTTGTTGATTTTGTGGACAAGCTTATTTTACGCCTGATAGAGGGAGATAACCATATTCTTCGGACGAATCATGTTACTTGGCTGCTTGCACAGATTATTCGGGTTGAGCTTGTGATGAATGCATTAACCTCAGACCCTAGAAAGATGGAGACAACTAGAAAGATTCTATCATTTCATAAAGAAGATAGAAGCTCTGATCCTAACAATCCTCAAAGCATCCTACTTGACTTTATAAGCAGTTGTCAGAATTTACGAATTTGGTCCTTGAATACATCAACCAGAGAATATTTGAACAATGAGCAACTTCAGAAAGGGAAGCAAATAGATGAATGGTGGAGACTAGCAAACAAAGGAAGTTCAATAGGAGTTGCAACATGCACATCAGGAGCATTATTGGGTGGAACAACAGGTGTGGGTTCTGAAGGAGTAGCAGGTTCGTTCTCGGGCATGGGAAAAACCAAAGTTGATTCCTCAACAACAACAACAGGGGAACGCATGATGGACTATGTGACTTTGGATGATAGATCAATTGGAATGTTTTGGGTTATGTCTTACACCATGGCACAGCCTGCTTGTGACACTGTGATGAATTGGTTCTCCTCTGCTGGAGCGGCAGAATTGATACCGGGATCACATTTACAGTCCAATGAGAGGGTAATGGTGATGAAGGAAATAAGCCCATTGCCGATGTCATTATTATCTGGATTTTCATTGCACTTATGTATGAAACTGGCCTTTCAAATGGAAGATTCTTTGTTTTCAGGACAGGTTGTGCCTAGCATTGCACTGGTTGAAACATATACTCGATTGCTGCTAATTGCACCGCACTCTTTATTTCGTTCACACTTCAGTCACTTGTCACAGAGGTATCCTGCAATATTAAGCAAGCCTGGGGCGACTCTTTTGGTGCTTGAAATTTTGAACTACCGCTTGCTTCCACTCTACAGGTACCAAGGGAAAGGCAAAACCTTAATGTATGATGTTACAAAAATAGTTTCTGCACTTAAAGGGAAACGTGGAGATCATCGTGCATTTAGGTTGGCAGAAAACTTGTGCATGAATCTAATTTTGTCATTGAGAGACCCTTTTCAAGTGAAAAAGGAAGGGAAGGGTCCAACTGAATTTACAGAAACTTTGAATCGTATAACAATAATTACTCTTGCCATCATCATTAAGACACGTGGAATTGCTGAAGCTGATCACCTGCCTTATCTACAAACTATGTTGGAACAAATAATGGCAACTAGTCAACATACGTGGTCAGAAAAAACTTTACGTTATTTCCCTTCCCTGCTCCGTGAAGCCATGATTGGACGGATAGATAAGAAGAACCTGGCAATTCAAGCATGGCAGCAGGCAGAAACAACTGTGATCGCCCAATGCACCAATCTTCTTTTATCATCTGGTGATCCTAGTTATGTCATGACCTACATCAGTCATAGTTTTCCTCAGCACCGACGATATCTATGTGCTGCTGCATGTATGCTGATGCATGGGCACCCTGACAACATTAATGTTGCAAACCTCGCACGTGTCTTAAGGGAGTTTTCCCCTGAAGAAGTGACATCAAATATTTACACAATGGTGGATGTTCTTCTTCATCACATTCATATGGAACTGCAGCATGGACATTCCTTACAGGACCTTTTATCAAAAGCTTGTGCAAACCTTGCATTTTTCATTTGGACCAATGAGCTGCTTCCTTTGGATATTTTGCTTCTAGCACTTATTGACCGTGATGATGATTCCCATGCTTTACGTATTGTGATTAGTCTACTAGACAAGCAAGAACTTCAACAAAGAGTAAAATTATTCTGTAATAACCGTGGGTCCCCTGAGCATTGGCTTTGTTCTGGAATGTTTAAGCGTGCTGATTTGCAAAAGGCACTTGGGAACCATCTCTCTTGGAAGGAAAGGTATCCTGTGTTCTTTGATGATGCTGCCGCACGTTTGCTTCCAGTCATTCCCTTGGTGGTTTATAGGCTTATTGAAAATGATGCCACAGATCAAGCTGACAGGGTTCTGGCCATGTATTCTCAATTGCTTGCTTACCACCCTTTAAGATTTACATTTGTCCGTGACATACTTGCATACTTTTATGGACATCTTCCAGGAAAGCTCACTGTCCGAATATTGAATATACTTGATTTGGGCAAGATCCCATTTTCTGAATCATTCCTCAAACACATGAGTTCATCAAATCCCGTCATATGCCCACCTCTCGACTATTTTGCTACTCTGTTATTGGGCCTTGTGAATAATGTTATACCTCCAATAAATACCAACTCAAAATCTGGTTCAATGGGAGATACTTCAAATAATACACTGCGTGCACCACATAACAAAACTCCAGCAGCATCTCAGTCCGGACCAACAAATGCTTCTGAAGGCCAGAAATCATTCTATCAAACCCAGGATCCTGGTACATTTACTCAGCTGGTTCTTGAAACAGCAGTCATAGAAATACTCTCTCTCCCTGTACCTGCAACACAGATTGTATCATCACTTGTCCAGATCATTGTTCATATACAATCGACTTTAATTCAGTCCAGCAATGGTCTGCATGGACCACCAAATGGTGTTGGGCAAGGTTCGGTTTTACCAACTTCCCCTTCAGGTGGAAGCACAGATTCCTTAAGTGCAAGCCGATCAAGTGCTTCAGTTTCAGGAATAAATGCGTCTAACTTTGTTTCCAGAAGTGGTTACACATGTCAACAGTTATCTTGCTTGTTAATCCAAGCTTGTGGTCTGCTATTAGCTCAGCTCCCTCCAGATTTTCACAAACAACTCTATATAGAGGCATCATGTCTAATAAAAGAGAGTTGGTGGCTTACTGATGGGAAAAGATCATTGGGGGAACTAGACTCTGCTGTAGGCTATGCTTTGTTAGATCCAACATGGGCTGCTCAAGACAACACCTCAACAGCCATTGGTAATATAGTTGCCCTCCTTCATGCTTTCTTCAGTAACCTGCCACAGGAATGGCTAGAAGGGACGCATCTCATTATCAAACATCTCAGACCTGTAACATCAGTTGCAATGTTAAGAATAGCATTCCGTATAATGGGTCCATTGCTCCCAAGACTCTCTAATGCTCACTCACTCTTCAACAAGACCCTGTCTTTGCTTTTAAATACAATGGTGGATGTCTTTGGGAGGAATTCTCAGCCAGCAACTCCTGTTGAAGCATCAGAAATAGCAGATCTCATTGACTTCCTTCATCATGCTGTCCATTATGAAGGACAGGGAGGGCCGGTGCAGGCTAGCAGCAAGCCCAGACCAGAAGTTTTGGCTCTCTGTGGAAGAGCATCAGAAAGTCTGCGTCCAGATATTCAGCATCTTCTTTCCCATTTAAAAACTGATATAAATTCCTCTATTTATGCTGCAACTCATCCAAAGCTAGTCCAGAATCCCTCGTAA 4653 42.6 MDPNPRPSSRAYQLHPARSSIVDLFNLYLGRSSHQKPEDSNREPPNKTQKRVTALNRELPPRNEQFLLDFGQLQSQFSDQDQLRSVTESILISLVVPCSGHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMSVGQGNQAVTSVSSTSLSPSGMLPSSSTIHNSSTFQSSNPASPLPSVHGISSPAQSATDPSPCVALSPVKSSDISCSGQQQQESDVAKSWRPDKALIEWLHSCLDVIWLRRDMMAMHMQMLDQHLQCPTFGTHRFLSQTTSPISGEAVANLRYSPIMYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVAPCYRSHPQGPSAGAVFTSEMICEATIDRIVELLKLTNSDINCWQEWLVFSDIFFFLMKNGCIDFVDFVDKLILRLIEGDNHILRTNHVTWLLAQIIRVELVMNALTSDPRKMETTRKILSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRLANKGSSIGVATCTSGALLGGTTGVGSEGVAGSFSGMGKTKVDSSTTTTGERMMDYVTLDDRSIGMFWVMSYTMAQPACDTVMNWFSSAGAAELIPGSHLQSNERVMVMKEISPLPMSLLSGFSLHLCMKLAFQMEDSLFSGQVVPSIALVETYTRLLLIAPHSLFRSHFSHLSQRYPAILSKPGATLLVLEILNYRLLPLYRYQGKGKTLMYDVTKIVSALKGKRGDHRAFRLAENLCMNLILSLRDPFQVKKEGKGPTEFTETLNRITIITLAIIIKTRGIAEADHLPYLQTMLEQIMATSQHTWSEKTLRYFPSLLREAMIGRIDKKNLAIQAWQQAETTVIAQCTNLLLSSGDPSYVMTYISHSFPQHRRYLCAAACMLMHGHPDNINVANLARVLREFSPEEVTSNIYTMVDVLLHHIHMELQHGHSLQDLLSKACANLAFFIWTNELLPLDILLLALIDRDDDSHALRIVISLLDKQELQQRVKLFCNNRGSPEHWLCSGMFKRADLQKALGNHLSWKERYPVFFDDAAARLLPVIPLVVYRLIENDATDQADRVLAMYSQLLAYHPLRFTFVRDILAYFYGHLPGKLTVRILNILDLGKIPFSESFLKHMSSSNPVICPPLDYFATLLLGLVNNVIPPINTNSKSGSMGDTSNNTLRAPHNKTPAASQSGPTNASEGQKSFYQTQDPGTFTQLVLETAVIEILSLPVPATQIVSSLVQIIVHIQSTLIQSSNGLHGPPNGVGQGSVLPTSPSGGSTDSLSASRSSASVSGINASNFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHKQLYIEASCLIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHLIIKHLRPVTSVAMLRIAFRIMGPLLPRLSNAHSLFNKTLSLLLNTMVDVFGRNSQPATPVEASEIADLIDFLHHAVHYEGQGGPVQASSKPRPEVLALCGRASESLRPDIQHLLSHLKTDINSSIYAATHPKLVQNPS* 1551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5171669 5272861 + Vvi1g479 Vvi1g479 769679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g479 1550 MobiDBLite consensus disorder prediction 1173 1213 - -
Vvi1g479 1550 Pfam Mediator complex subunit 23 624 1163 IPR021629 -
Vvi1g479 1550 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 6 155 IPR021629 -
Vvi1g479 1550 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 572 1544 IPR021629 -
Vvi1g479 1550 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 249 525 IPR021629 -
Vvi1g479 1550 MobiDBLite consensus disorder prediction 150 201 - -
Vvi1g479 1550 PANTHER BNAA09G30010D PROTEIN 572 1544 - -
Vvi1g479 1550 PANTHER BNAA09G30010D PROTEIN 249 525 - -
Vvi1g479 1550 PANTHER BNAA09G30010D PROTEIN 6 155 - -
Vvi1g479 1550 MobiDBLite consensus disorder prediction 1265 1292 - -
Vvi1g479 1550 MobiDBLite consensus disorder prediction 150 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g479 K15166 MED23; mediator of RNA polymerase II transcription subunit 23 - vvi:100262719 2925.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g479 . Blo16g00745 . Bda11g00181 Bpe13g01015 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0377 Cone9ag0406 . Csa05g02005 . . . . . Bda11g00181 . . . Bma06g01126 . . Cmo15g01020 . Cma15g00972 . Car15g00919 Cpe13g00354 . Bhi12g00930 . . . Hepe02g2629 . . Cla01g00627 Cam01g0656 Cec01g0648 Cco01g0674 Clacu01g0644 Cmu01g0619 Cre09g1885 Lsi09g00678 . . Cme09g01364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006882 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 3 1 1 1 1 1 37