Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g48 ATGTTGAGGAGGCGAGGCAGCAAGGGGGGAGAACTCGGGGTTCCAGCAGCTGCAGCTGCAGATGCGGATGGAGTTGTAGAGCCTGCCAAGAGCTTGTCGGAGAGATTCCCGGCGCTGGTCACCGGATCCTTTTTCATGACATGGTATTTTTCGAATATCGTCTTCAACATACTCAACAAGAAGGTTTATAATTATTTCCCGTACCCACGCTTTGTTGCTTTTATCCATCTCCTGGTGGGTGTGATCTACTGTCTTGTCTGTTGGTCTCTTGGCTTACCAAAACGTGCTCCGATCGATAAGGAGTTCCTGCTGCTCCTCACTCCTGTTGCCTTCTGCCATGCCCTTGGACATGTTATGACTAATGTATCATTTGCATCTGTGGCTGTGTCATTCACACACACTATCAAAGCCCTCGAGCCATTCTTCAATGCTGCGGCTTCTCAATTTGTTTTAGGCCACCAGATTCCCTTCCCCCTCTGGCTGTCATTGGCCCCTGTTGTTTTTGGTGTATCAATGGCATCACTCACTGAACTTTCTTTCAACTGGACTGGTTTCATCAGTGCAATGGTTGCAAATTTTGCTTTTACCTACAGAAGTTTATATTTAAAGAAAGCAATGACAGGGATGGACAGTGCAAATGTGTGCGCTTATACTGCAATGATCGCCCTTGTGTTTTGCTTCCCACCTGCACTACTTATTGATGGGCCTCAGCTGATGCAACATGGGTTCAGGGACGCTATTGCTAAAGTGGGTCTAGCTAAATTAGTGTCTGATTTATTCTGGGTTGGATTGTTTTTCCATTTGGACAATCAGCTTGCTGTCAGCACCTTGGAACGGGTTTCGCCGCTCACACATGCAGTTGGAAGTGTGTTGAAGCGAGTGGTCGTCATTGTGTTGTCTACCATTGTATTTGGTAATAAGATCACGACGCAGACTGCGATCGGTACTGCAATAGCCATTACTGGCGTTGCCATCTACTCCCTCATAAGGGCAAATATGGAGGAAGAAAACCAGAATGCTGCGGCAACTTAA 1032 46.9 MLRRRGSKGGELGVPAAAAADADGVVEPAKSLSERFPALVTGSFFMTWYFSNIVFNILNKKVYNYFPYPRFVAFIHLLVGVIYCLVCWSLGLPKRAPIDKEFLLLLTPVAFCHALGHVMTNVSFASVAVSFTHTIKALEPFFNAAASQFVLGHQIPFPLWLSLAPVVFGVSMASLTELSFNWTGFISAMVANFAFTYRSLYLKKAMTGMDSANVCAYTAMIALVFCFPPALLIDGPQLMQHGFRDAIAKVGLAKLVSDLFWVGLFFHLDNQLAVSTLERVSPLTHAVGSVLKRVVVIVLSTIVFGNKITTQTAIGTAIAITGVAIYSLIRANMEEENQNAAAT* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 544466 549815 - Vvi1g48 Vvi1g48 769248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g48 343 Coils Coil 332 343 - -
Vvi1g48 343 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 22 335 - -
Vvi1g48 343 Pfam Triose-phosphate Transporter family 40 327 IPR004853 -
Vvi1g48 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 259 328 - -
Vvi1g48 343 PANTHER SOLUTE CARRIER FAMILY 35 22 335 - -
Vvi1g48 343 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 39 336 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vvi1g48 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 80 176 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g48 K15283 - vvi:100264496 635.95