Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g480 ATGGAGAGAGATTTCATGGGTTTGAGTTCAAAAGAGCCCCTGGCTGTTGTGAAAGAGGAGATTATTGAAGGAGCATTTACTAAAGGTTCGGGAATACAGTGGCCCTTTTCAAACAAGATCTCTGCACTTCCTCATTTCATGTCTTTTAAGACTGCGCAAGAAGACAAGTCCAAAAAGGTTGCATCTGATTCCCTTGTGACTTCTGGATTTGACCCAAGTAACAAATGCCCAGCTGGTGAAATGCAGAAAGCAGTCAATCCCGATAGGCAAGGTGGAAGTTTTGCAGTGACAGCTTATCCTGTGCAACATGATTCACATTTAATGAATCATCATCCTCATGATGTCAAGATGTTTCCAGTCTCAAACCAAACGATTTCAGTTTCCATGGGCAACCCCTTTTTCAAGACCCATTTTGCTGCAGCTGGTCAGAACATGGTTGGTGCTGCCCTGAAGCAACAATTACTTGGAGGAATTCCTGTTTCAGCTCCACATGGAATTCTGCCCTCTGCTGGTTCTTTTGCTGGAATCACTGAACCATGGAATAATTTTAAGACATCTGGATCTCCTTCCCAATTGACCATCTTTTATGCTGGTACAGTGAATGTCTATGATGATATCTCGCCTGAGAAGGCTCAGGCTATCATGTTCTTGGCTGGGAATGGGGCTTCCATGGCTTCTAGAATGGGGCAACCGAGAGCTCAAGTCCAGACACCTGCTTCAAAGCTGGCAGCAGGTGATGGTGTCCTTGCAAACCAGCCCATGAATATATCACCTTGCTCTGGTCTCTCAAGCCCCATATCTGTTTCTTCACATCCTGTTGCTCAGTCTGGGAGTGGATCTACTAGCACCGAGGAAGTGTTGGCTGCTAAAACCACAGGGGTTTCTGCCACTCCTGTTACCAAATTGGATTCCCCTAAAATGCTCTCTGTTGCTGCAACACCTATGATGCCATCAGCTGTTCCTCAAGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGCAAGGAGAGGGTGATGAGCACAGCGCCATACAATATCAGCAAGAAATCCCCTGAATGTGCCACCCCAGGATCTAATGGCATGAGTTACACAGCGAGTTCTGGTGCAGGTGCAAGTGCTGGTGCTGGTGCTCTTTCAGCTAACAAGGAGTAG 1155 46.84 MERDFMGLSSKEPLAVVKEEIIEGAFTKGSGIQWPFSNKISALPHFMSFKTAQEDKSKKVASDSLVTSGFDPSNKCPAGEMQKAVNPDRQGGSFAVTAYPVQHDSHLMNHHPHDVKMFPVSNQTISVSMGNPFFKTHFAAAGQNMVGAALKQQLLGGIPVSAPHGILPSAGSFAGITEPWNNFKTSGSPSQLTIFYAGTVNVYDDISPEKAQAIMFLAGNGASMASRMGQPRAQVQTPASKLAAGDGVLANQPMNISPCSGLSSPISVSSHPVAQSGSGSTSTEEVLAAKTTGVSATPVTKLDSPKMLSVAATPMMPSAVPQARKASLARFLEKRKERVMSTAPYNISKKSPECATPGSNGMSYTASSGAGASAGAGALSANKE* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5283991 5288251 - Vvi1g480 Vvi1g480 769680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g480 384 ProSiteProfiles Tify domain profile. 185 220 IPR010399 -
Vvi1g480 384 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 358 IPR040390 -
Vvi1g480 384 Pfam tify domain 188 219 IPR010399 -
Vvi1g480 384 Pfam Jas motif 321 345 IPR018467 -
Vvi1g480 384 MobiDBLite consensus disorder prediction 344 370 - -
Vvi1g480 384 MobiDBLite consensus disorder prediction 342 384 - -
Vvi1g480 384 MobiDBLite consensus disorder prediction 267 286 - -
Vvi1g480 384 PANTHER PROTEIN TIFY 6B-LIKE ISOFORM X1 10 358 - -
Vvi1g480 384 SMART tify_2 185 220 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g480 K13464 JAZ; jasmonate ZIM domain-containing protein - vvi:100262965 729.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g480 Vvi17g188 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g480 . . . . . Bpe10g00980 . . Cmo04g01093 . Cma04g01015 Cma04g00070 Car04g00951 Car04g00065 . . . Bhi07g00375 Tan04g1530 . Lac13g1371 Hepe01g0565 . . Cla07g00565 Cam07g0591 Cec07g0659 Cco07g0630 Clacu07g0595 Cmu07g0628 Cre07g0968 . Cone19ag0746 Cone6ag0376 Cone9ag0405 Lsi04g01112 . . . Blo06g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14512 PF06200 tify 1.30E-16 No_clan Vvi TF