Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g482 ATGCGGGGGAGCATTATAGGCATGGGAGTGGCAAGAAATGATTGTGATGGTGACCTTTACCTGATGGTAGCTGCCCTTCTCGCCTTCCGCGACTCCGTCCGCGGCAGCACCCTCATCTGGAACGGTACCGACACATGTTCCTGGGAAGGTATCCAGTGCGATGCTGACCGCGTTACCTCCCTACGCCTTCCCGCCGACGACCTCACAGGTAATATTCCCCCCAACACACTCGGTAACCTTACCCAACTCCGCGATCTCAGTCTACGGGGGAACTCCCTCACCGGTAACCTCCCCTCGGATTTGGGCTCCTGTACGCAACTCCAGCGGCTATTCTTGCAGGATAATCAGTTTTCTGGCCAGATACCGGCGGGACTCTTCCTGTTGAATAACCTTGTTCGCTTGGACTTGTCGAGAAATAATTTATCCGGCGAGATCTCGCAGGGGTTTGGGAATCTCACAAAGTTGAGAACTTTGTATTTGGAGAGAAACCAACTCAGCGGGTCTATTCCAGATTTGAACCTCGAGTTGCGCGACTTCAATGTTTCTTACAATAGATTGAGTGGCTCTATTCCAAAAGCGATTGCTGGAATTGTCATTGCTTCCGTCATCGGTCTGGTTTTAATTATTATAGTTGTATTGATTTTTTTTAGAAAATATAGGAGGACGACAAGATCAGGGCCTGAATTTGAAATTCCTAGCAATCAACCAGTTGATATGGGAGAAAACGGTGGTGGGATAAATGGGTTTCCAGCAGAAAAGGCAGCAAATGGAGTTGAGAAAATTAGGAATGCTAATGGGTTGGTGTTTTTGGGGAATGGTTTAAGTGTATTTGATTTGGAGGAGCTGTTGAGAGCCTCAGCTGAGGTGTTGGGGAAGGGGACATGTGGTACTACTTATAAGGCTATGGTGGGGGAAGGGGTTGAAGTGGTTGTGAAGAGATTGAGAAATATATGTGTTTATGAGAGGGAGTTTCTGGAGGAGGTTGCAAGGTTAGGAGGGATGGTTCATGAAAATTTGGCATCTATCAGAGCATATTATTACGGCAGGGATGAGAAGCTTCTTATCTATGACTGCTTGCCCATGGGAAACTTGTCCTCACTTTTACATGGAGACAGAGGTGCATGGAGAGCTCCACTGAGTTGGGAAGTTAGGGGTAGAATTGCTTTAGGAGCTGCCCGTGGTATCAAATATCTACATTCTCATGGCCCCAATGTCTCCCATGGCAACATCAAGTCATCCAATATCCTGCTCACCAATTCCTGTGATGCTCTAGTTACAGAATTTGGCATAGTCCAACTGGTTTCCGTGACCTCAGCACCCAAACATTCAGGCTATTGTGCACCAGAGACCAGGGGTTCCTATACGGTTTCCCAAAAAGCCGATGTCTACAGTTTCGGTGTTGTGCTTTTGGAACTGCTGACAGCCAAAGCTCCCACCTATGCCCTTTCCAACGAGGAAGAGATGGAGCTTCCTAGGTGGGTGGAGTCTGTGGTTGAGGAAAGGGGGACGATTGATGTGTTTGATCTTGAGCTTCTTAGGTATGACAACATTGAGGAGCAAGTTGTTCAGCTGTTACATCTTGCTCTGCTTTGTACTTCTAAACACCCTAAAAGACGCCCCTCCATGGCTGAGGTGACAAGGCAGATTGAGCTGATTTTTGGGTCGGGGCTACCGGAGTATGAGCCACAGCCTAATCAGATTGAAGATGGATCATGA 1716 47.73 MRGSIIGMGVARNDCDGDLYLMVAALLAFRDSVRGSTLIWNGTDTCSWEGIQCDADRVTSLRLPADDLTGNIPPNTLGNLTQLRDLSLRGNSLTGNLPSDLGSCTQLQRLFLQDNQFSGQIPAGLFLLNNLVRLDLSRNNLSGEISQGFGNLTKLRTLYLERNQLSGSIPDLNLELRDFNVSYNRLSGSIPKAIAGIVIASVIGLVLIIIVVLIFFRKYRRTTRSGPEFEIPSNQPVDMGENGGGINGFPAEKAANGVEKIRNANGLVFLGNGLSVFDLEELLRASAEVLGKGTCGTTYKAMVGEGVEVVVKRLRNICVYEREFLEEVARLGGMVHENLASIRAYYYGRDEKLLIYDCLPMGNLSSLLHGDRGAWRAPLSWEVRGRIALGAARGIKYLHSHGPNVSHGNIKSSNILLTNSCDALVTEFGIVQLVSVTSAPKHSGYCAPETRGSYTVSQKADVYSFGVVLLELLTAKAPTYALSNEEEMELPRWVESVVEERGTIDVFDLELLRYDNIEEQVVQLLHLALLCTSKHPKRRPSMAEVTRQIELIFGSGLPEYEPQPNQIEDGS* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5301657 5310084 - Vvi1g482 Vvi1g482 769682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g482 571 Gene3D Ribonuclease Inhibitor 128 201 IPR032675 -
Vvi1g482 571 Gene3D Ribonuclease Inhibitor 22 127 IPR032675 -
Vvi1g482 571 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 193 - -
Vvi1g482 571 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 193 553 - -
Vvi1g482 571 PANTHER OS05G0588300 PROTEIN 193 553 - -
Vvi1g482 571 PANTHER OS05G0588300 PROTEIN 14 193 - -
Vvi1g482 571 Gene3D Phosphorylase Kinase; domain 1 255 357 - -
Vvi1g482 571 Gene3D Transferase(Phosphotransferase) domain 1 359 555 - -
Vvi1g482 571 ProSiteProfiles Protein kinase domain profile. 284 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g482 571 SUPERFAMILY L domain-like 33 197 - -
Vvi1g482 571 Pfam Leucine rich repeat N-terminal domain 24 54 IPR013210 -
Vvi1g482 571 Pfam Leucine rich repeat 121 165 IPR001611 GO:0005515
Vvi1g482 571 Pfam Protein kinase domain 287 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g482 571 SUPERFAMILY Protein kinase-like (PK-like) 288 549 IPR011009 -
Vvi1g482 571 SMART LRR_typ_2 80 104 IPR003591 -
Vvi1g482 571 SMART LRR_typ_2 128 151 IPR003591 -
Vvi1g482 571 SMART LRR_typ_2 152 175 IPR003591 -
Vvi1g482 571 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g482 Vvi14g743 ECH
Vvi1g482 Vvi17g172 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76508 PF00069 Pkinase 6.90E-28 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g482 - - vvi:100247349 1025.39