Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g484 ATGATCATCATATACTATATACAAAAATCAAGTTGTCTCACTGCCTTACGTAATTCTGCACTGGACAGCATGTCTGTAAGCGTTTCTCTTTGTCTCTCGTCTCTCTTGATTTTTCTCATCACCTTCTCAGCTCTGCCAAGCCCTTCAATCTCTGCCATAGACACCTTCATCTTTGGTGGGTGCGCTCAGATAAGGTACGTTCAGGGCTCACCCTACGAGTCCAACGTCAATTCTATTCTCACCTCCCTCGTCAACTCAGCCTCGGCTCCTGGCATCGCCGCCCTCTACAACAAGTACACCGTCCCTGGCCCCACCTCTCAGGACACCGTCTCCGGCCTCTACCAATGCAGAGGCGACCTCAACCCCGGCGACTGTGCTCGCTGCGTGGCTCGCTGCGTGTCTCAACTCGGAGCCCTCTGTCTTGACTCCTGCGGCGGCGCGTTGCAGCTCGAAGGATGCTTCGTCAAGTACGATAACGCCACCTTCCTAGGGGTGGAAGACAAGACGGTGGTGGTGAAGAAATGTGGGCCGTCGATTGGGTATGACTCCGACGCGTTGACCCGCCGCGATGCCGTGCTGGGCTACCTGGAGGGCGGGACCCAGACTTTTCGGGTCGGGGGGTCAGGGAACATCCAGGGTATGGCGCAGTGCGTAGGGGATCTGAGTGCGAGCGAGTGTCAGGATTGCGTGTCGGACGCCATCGGACGGCTGAGAAGCGAGTGTGGGACCTCTGCTTGGGGAGACATGTTCTTGGCCAAGTGCTACGCGCGGTTCTGGGAAGGTGGAGATCGATCGCACACTGCAAATGATGGGTATGGTTATGATCATCATGATCATGATAACGACAATGATGAAGACATCGAAAAGACATTAGCAATTCTCATCGGGCTTATAGCAGGGGTTGCGTTAATCATAGTTTTCCTTTCCTTCTTAAGAAAAGTGCTTGAAGGAAAAGATGGCAAATGA 966 53.73 MIIIYYIQKSSCLTALRNSALDSMSVSVSLCLSSLLIFLITFSALPSPSISAIDTFIFGGCAQIRYVQGSPYESNVNSILTSLVNSASAPGIAALYNKYTVPGPTSQDTVSGLYQCRGDLNPGDCARCVARCVSQLGALCLDSCGGALQLEGCFVKYDNATFLGVEDKTVVVKKCGPSIGYDSDALTRRDAVLGYLEGGTQTFRVGGSGNIQGMAQCVGDLSASECQDCVSDAIGRLRSECGTSAWGDMFLAKCYARFWEGGDRSHTANDGYGYDHHDHDNDNDEDIEKTLAILIGLIAGVALIIVFLSFLRKVLEGKDGK* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5320669 5323273 - Vvi1g484 Vvi1g484 769684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g484 321 Pfam Salt stress response/antifungal 207 258 IPR002902 -
Vvi1g484 321 Pfam Salt stress response/antifungal 65 159 IPR002902 -
Vvi1g484 321 ProSiteProfiles Gnk2-homologous domain profile. 163 263 IPR002902 -
Vvi1g484 321 Gene3D - 186 260 IPR038408 -
Vvi1g484 321 Gene3D - 53 162 IPR038408 -
Vvi1g484 321 PANTHER PLASMODESMATA-LOCATED PROTEIN 6 30 316 - -
Vvi1g484 321 ProSiteProfiles Gnk2-homologous domain profile. 54 162 IPR002902 -
Vvi1g484 321 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 30 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g484 - - - vvi:100247591 553.903
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g484 Vvi14g693 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g484 . . Bda01g01801 . Bpe13g01013 . . . Cmo04g01095 . Cma04g01018 . Car04g00953 Car04g00067 Sed06g0165 . Cpe01g01834 Bhi07g00378 Tan04g1527 Cmetu10g0773 Lac13g1367 Hepe01g0572 . . Cla07g00560 Cam07g0588 Cec07g0655 Cco07g0624 Clacu07g0591 Cmu07g0626 Cre07g0966 . . Cone6ag0373 Cone9ag0402 Lsi04g01110 . . Cme10g01607 . Blo11g00970 Bda07g01755 . . . Bma01g00483 . . . Cmo15g01022 . Cma15g00975 . Car15g00921 Cpe13g00352 . Bhi12g00934 . . . . . . Cla01g00633 Cam01g0661 Cec01g0653 Cco01g0679 Clacu01g0649 Cmu01g0623 Cre09g1881 Lsi09g00682 Csa05g01000 Chy09g00509 Cme09g01349
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005857 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 39