Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g489 ATGGAAATTTTGACAAAGAAAGGGTACCTTGAAGAAGGAGACGGAAACCCTTTCCAAAATGGCGCAATGGGTGTCAAGGAAGCCAACCGAATTCGCACTGCATGCCTTGATTTTACCCGAGATAGGTTCGATCTTATAAGTTACTTCTCGAGGAAAGATATCGAGGTCGTTGCAGGATCTGGATGCCCAAGCACAGATAGGAAAGTTGTCAACTCAGGCAAACGTCTAAGGGCACATGTAGATATTGATGAAGGAAATGTTTGCAGCTCCTGCATTTTGAGGGGAAACTGTGAAAGAGCATATGTGATGGCAAGTGAGGGTGAAGGGGGGCGGACTGTGGATCTCATGCGCATCCTATTGACATATGGGCTTGACCCCATTACTGGTACAGTGGAGAACATGCTCTGTCGAAGCAAAACAATTGAAGAATCTGCAAGAAGGCTACTAAAAGCAATGGTGGAGTTTGGCTCCAAGGAATTTGATTCCCTTCTCCCAAATGCTACCTCATCCAAAAAGGTAGCATCACTGCAAGAGAGTCTGGCATCAGCCGAAAAAGGCCGAACTAATCTTCCAATTAAGCAAGGTGATTGGCTTTGCCCAAAATGCAACTTCCTAAATTTTGCTAGAAATATTAAGTGCTTGCGATGCAATGATATATCCCAAGAAAGACTAAGGAAACTATGGGAGGATCAAGATCATCTTCCATTGAAGAAGGGAGACTGGATATGTAACAAATGCAATTTCCTAAATTTTGCTAGGAATACGATATGTTTGCAATGTAAGGAGAAGCCTCCAAAGCGGGAACTCAATCCAGGGGATTGGGAATGTGATTCGTGTAACTTCATCAATTTTGGAAGAAACATGGTATGCTTGAAATGTGATCATAAACGGCCAAAGGCTTCTGCTCAACCTGGTCATGAAATTCAAGGATTTTCCTCCTATCATAAGGGGTGGAGATTTGTGGAGGATGAGAGTAAGGACATTGATGGTTCAAAATCATGGGATGGAATTTCTGGATTTGTAGATTTTCCCATTGCAGGGGGTAAAAGCGAATTGTCTCAGAATTCAAGTAAAAGATCAAAATGGAAAGCAGAGATGTTGGAGAAGAGCAGACCCCATTCAAGGGGAGGCGAATCTAGATCTGCCAGCCTCCAGAGAAGACCAGAGTTTGTTGAATGTAGCAGTGATGAGGAGATGGCTGAATGGTTTGGGCATGGAAAGAGGATGCAAATGGAGGAGGAGGAAGAAATGCCGGAAATGAGAGGATTTCTGCTTCGCTGA 1281 43.64 MEILTKKGYLEEGDGNPFQNGAMGVKEANRIRTACLDFTRDRFDLISYFSRKDIEVVAGSGCPSTDRKVVNSGKRLRAHVDIDEGNVCSSCILRGNCERAYVMASEGEGGRTVDLMRILLTYGLDPITGTVENMLCRSKTIEESARRLLKAMVEFGSKEFDSLLPNATSSKKVASLQESLASAEKGRTNLPIKQGDWLCPKCNFLNFARNIKCLRCNDISQERLRKLWEDQDHLPLKKGDWICNKCNFLNFARNTICLQCKEKPPKRELNPGDWECDSCNFINFGRNMVCLKCDHKRPKASAQPGHEIQGFSSYHKGWRFVEDESKDIDGSKSWDGISGFVDFPIAGGKSELSQNSSKRSKWKAEMLEKSRPHSRGGESRSASLQRRPEFVECSSDEEMAEWFGHGKRMQMEEEEEMPEMRGFLLR* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5369376 5373087 - Vvi1g489 Vvi1g489 769689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g489 426 Gene3D - 184 221 - -
Vvi1g489 426 Gene3D - 266 300 - -
Vvi1g489 426 Gene3D - 230 265 - -
Vvi1g489 426 ProSiteProfiles Zinc finger RanBP2 type profile. 237 266 IPR001876 -
Vvi1g489 426 Pfam Zn-finger in Ran binding protein and others 272 298 IPR001876 -
Vvi1g489 426 Pfam Zn-finger in Ran binding protein and others 237 261 IPR001876 -
Vvi1g489 426 Pfam Zn-finger in Ran binding protein and others 193 216 IPR001876 -
Vvi1g489 426 SUPERFAMILY Ran binding protein zinc finger-like 186 219 IPR036443 -
Vvi1g489 426 MobiDBLite consensus disorder prediction 390 426 - -
Vvi1g489 426 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 214 409 - -
Vvi1g489 426 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 177 218 - -
Vvi1g489 426 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 176 - -
Vvi1g489 426 SUPERFAMILY Ran binding protein zinc finger-like 232 264 IPR036443 -
Vvi1g489 426 SMART zf_4 239 263 IPR001876 -
Vvi1g489 426 SMART zf_4 272 296 IPR001876 -
Vvi1g489 426 SMART zf_4 195 219 IPR001876 -
Vvi1g489 426 ProSiteProfiles Zinc finger RanBP2 type profile. 270 299 IPR001876 -
Vvi1g489 426 MobiDBLite consensus disorder prediction 350 426 - -
Vvi1g489 426 SUPERFAMILY Ran binding protein zinc finger-like 266 300 IPR036443 -
Vvi1g489 426 ProSitePatterns Zinc finger RanBP2-type signature. 274 293 IPR001876 -
Vvi1g489 426 ProSiteProfiles Zinc finger RanBP2 type profile. 193 222 IPR001876 -
Vvi1g489 426 PANTHER ZINC FINGER PROTEIN 1 176 - -
Vvi1g489 426 PANTHER ZINC FINGER PROTEIN 177 218 - -
Vvi1g489 426 PANTHER ZINC FINGER PROTEIN 214 409 - -
Vvi1g489 426 MobiDBLite consensus disorder prediction 356 382 - -
Vvi1g489 426 ProSitePatterns Zinc finger RanBP2-type signature. 197 216 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g489 - - - vvi:100264495 830.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g489 Vvi14g644 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29