Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g49 ATGGCTTCGCTGGCGGCTTCGGTTCGTTGCTCTCAGTTTTCTTCTCTGGGCTTGAATGCGAAGAGAATTTCGCGTAATTATGGACTGCCCAGGACTCCATCACTTGTTTCTGCGAGTCCCTTCTCGGCGCTGCCGGAGATTCGAGTGTCTGCGGCTCCGGTTCAATTCTCCGGCAATGCTTTGAAATTTGCTGGTTGGGATCCTCTGCTGAGGCGGCAAGGTGGCGCCGGAGTAAAACTTCCTGTTCCGGCGGCTGCAGCTGCGGATGCCGATGGTGTTACAAAGCCTTCAAAGAGCTTTGCAGAGAAATTCCCCGTCCTGGTCACCGGATTCTTTTTCTTTATGTGGTACTTCTTGAATGTAATTTTCAACATACTTAACAAGAAGGTTTATAATTATTTCCCATACCCATACTTTGTTTCTCTTATACATCTCCTTGTGGGCGTGGCCTACTGTCTTGTCAGTTGGGCTGTTGGTTTACCAAAACGAGCTCCGATGGATAAGGAGCTCCTGCTGCTCCTCACTCCTGTTGCACTCTGCCATGCCCTTGGACATGTTATGTCTAATGTGTCATTTGCAGCGGTGGCTGTGTCATTTACCCACACTATCAAAGCCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCATTAGTGCAATGATTTCAAATATTGCATTTACCTACAGAAGTATATATTCAAAGAAAGCAATGACGGGAATGGACAGCACAAATGTATATGCATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTGATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAAGTCGGTCTAACCAAATTTTTGTCTGATCTATTTTGGATTGGAATGTTTTACCATCTGTACAATCAGCTTGCTACCAACACCTTGGAACGGGTTGCGCCGCTTACACATGCAGTTGGAAATGTGTTGAAGCGAGTTTTTGTCATTGGATTCTCCATTGTTATATTCGGGAACAAAATCTCTAGGCAGACTGGGATTGGAACTGCAATAGCCATTGCTGGTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGAAAGCTGCTGTAACTCCAGCATCATAG 1245 45.94 MASLAASVRCSQFSSLGLNAKRISRNYGLPRTPSLVSASPFSALPEIRVSAAPVQFSGNALKFAGWDPLLRRQGGAGVKLPVPAAAAADADGVTKPSKSFAEKFPVLVTGFFFFMWYFLNVIFNILNKKVYNYFPYPYFVSLIHLLVGVAYCLVSWAVGLPKRAPMDKELLLLLTPVALCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNIAFTYRSIYSKKAMTGMDSTNVYAYTSIIALLFCIPPAVLIEGPQLMQYGFRDAIAKVGLTKFLSDLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISRQTGIGTAIAIAGVAIYSLIKANIEEQKRKAAVTPAS* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 550210 556153 - Vvi1g49 Vvi1g49 769249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g49 414 Pfam Triose-phosphate Transporter family 108 395 IPR004853 -
Vvi1g49 414 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 78 403 - -
Vvi1g49 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 324 396 - -
Vvi1g49 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 150 244 - -
Vvi1g49 414 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 107 405 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vvi1g49 414 PANTHER SOLUTE CARRIER FAMILY 35 78 403 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g49 K15283 - vvi:100259322 780.015