Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g495 ATGGTTAGAAACTTATTTGGTGCTTACTCTCGGAGTATTGAACCTGGAGATGGAGGAACATCAAATAAAAGGCAGCGGCTTCCATATAGTCCTGCAGAACTGGCTGCTATGGAGGTGAGAGCCATGGAATGTATCAGGCAGTTGCTTCTTAGATCTGCTGAAGCTCTGTTTTTGCTCCAACAACTTTGTCAGCATCATGTAACACGCTTGGTTCAGGGTTTTGATGTTAATCTACGACAAGAATTAGTTCAATTAACATTTCACCAACTTGTTTGTTCTGAGGAGGGTGATCGGCTGGCTACAAGGCTTATATCTTCTCTGATGGAGTATTACACTGGTCCTGATGGCAGGGGAACAGTTGACGATATTAGTGCAAGATTGCGAGAGGGTTGTCCAAGCTATTACAAGGAGTCTGATTACAAATTTTACTTAGCTGTGGAGTTTCTTGAGAGAGCTGCTGTGACTTCTGACACTGAAGAGAAGGAAAATCTTGCTAGAGAGGCCTTCAATTTCTTGAGTAAAGTTCCAGAGTCTGCAGATCTGCGAACTGTTTGCAAAAGATTTGAGGACTTGAGATTTTATGAAGCTGTGGTTCGCTTACCACTGCAAAAGGCACAAGCTCTTGACCCTGCAGGTGATGCTTTCAATGAGCAACTTGATGCAGGAACTCGGGAACATGCACTTGCTCAGCTTGAACAGTGCTATGAGATTATCACCAGTGCTTTGCGTTCTCTAAAGGGTGAGGCTTCCCAGAAGGAATTTGGATCTCCTGTGAGGCCTGCTGCTCGATCCACCCTTGATCAGGCTTCTCGAGACAAATACATACGCCAAATTGTTCAGCTTGGTGTTCAATCATCTGACAGAGTCTTTCATGAGTACTTGTACCGCACTATGATCGATTTGGGCCTTGAAAATGAGCTTTTAGAATATGGAGGTCCTGATCTGGTGCCTTTTCTGCAGAATGCTGGTCGTGAATCTTTGCAAGAGGTTCGGGCTGTTTCTTCTATAACATCAACAAGGTCTCCAGTGGGTCTATTTGGAGCACCTATTCCATCCAATCAAACCAAGTATTTTGATCTTTTGGCACGGTATTATGTCTTGAAGAGGCAACATGTACTTGCAGCTCATGTATTACTAAGACTGGCAGAGAGGCGCTCAACGGATGCAGGAGATGTCCCTACTTTAGAGCAGAGGCGCCAGTACCTGAGTAATGCAGTTCTGCAGGCAAAGAATGCAAGCAATAGTGACGGTCTAGTAGGTTCTGTCCGGGGTGCCTCTGACAATGGACTGCTGGATTTGCTTGAAGGGAAGCTTGCTGTTCTCCGGTTTCAAATAAAGATCAAAGGGGAACTGGAGGCTATAGCTTCCAGATTAGAATCTTCCAATGTTACATCTGAATCTGTCCTGAATGAATCATGCTCTGAGAGCAACCTGAATGCTGATACCAATTTTGCAAACACTGTACAAGAAAAGGCCAGAGAGATATCACTGGATTTGAAGAGTATTACTCAACTATATAATGAATATGCTGTTCCATTTGAGCTTTGGGAGATATGCCTGGAAATGCTGTATTTTGCTAACTATTCTGGTGATGCTGATAGTAGCATTGTAAGAGAAACCTGGGCTAGACTTATTGATCAAGCTCTTTCAAAAGGCGGCATTGCTGAAGCTTGTTCAGTCCTGAAGAGGGTTGGTTCTCACATTTATCCTGGAGATGGAGCTGTTTTACCTTTGGACACATTATGTCTCCACCTTGAGAAGGCTGCATTGGAGCGGTTAGCTTCTGGGGTTGAACCTGTTGGAGATGAAGATGTTGTGAGAGCTCTTCTCGCTGCTTGCAAGGGTGCAACTGAACCTGTATTAAACACTTATGAACAATTGTTATCAAATGGAGCTATTTTGCCATCGCCAAACCTGAGGTTGCGCCTTCTCCGTTCAGTTCTTGTGGTTCTTCGTGAATGGGCAATGTCTGTATTTGCACAGAGAATGGGCACAAGTGCTACTGGAGCTTCTCTAATTTTAGGTGGTGCATTTTCTTTGGAGCAAACAACTGTCATTAACCAAGGGGTTCGAGATAAAATCACAAGTGCTGCAAACAGGTATATGACCGAGGTGCGGAGGCTAGCCCTTCCACAGAGCCAGACCGAGGCTGTCTACCGTGGCTTCCGAGAGCTGGAGGAGTCCCTAATAAGTCCTTTTTCTTTTGAGCTTTTTTTAGATGTCTTGTTTGTTTTTTTTGTTTTTAAAAATATAAAATGGTAA 2262 43.99 MVRNLFGAYSRSIEPGDGGTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQQLCQHHVTRLVQGFDVNLRQELVQLTFHQLVCSEEGDRLATRLISSLMEYYTGPDGRGTVDDISARLREGCPSYYKESDYKFYLAVEFLERAAVTSDTEEKENLAREAFNFLSKVPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAFNEQLDAGTREHALAQLEQCYEIITSALRSLKGEASQKEFGSPVRPAARSTLDQASRDKYIRQIVQLGVQSSDRVFHEYLYRTMIDLGLENELLEYGGPDLVPFLQNAGRESLQEVRAVSSITSTRSPVGLFGAPIPSNQTKYFDLLARYYVLKRQHVLAAHVLLRLAERRSTDAGDVPTLEQRRQYLSNAVLQAKNASNSDGLVGSVRGASDNGLLDLLEGKLAVLRFQIKIKGELEAIASRLESSNVTSESVLNESCSESNLNADTNFANTVQEKAREISLDLKSITQLYNEYAVPFELWEICLEMLYFANYSGDADSSIVRETWARLIDQALSKGGIAEACSVLKRVGSHIYPGDGAVLPLDTLCLHLEKAALERLASGVEPVGDEDVVRALLAACKGATEPVLNTYEQLLSNGAILPSPNLRLRLLRSVLVVLREWAMSVFAQRMGTSATGASLILGGAFSLEQTTVINQGVRDKITSAANRYMTEVRRLALPQSQTEAVYRGFRELEESLISPFSFELFLDVLFVFFVFKNIKW* 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5436774 5450762 - Vvi1g495 Vvi1g495 769695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g495 753 Gene3D - 2 131 - -
Vvi1g495 753 Gene3D Nucleoporin, helical domain, central subdomain 304 406 IPR042537 -
Vvi1g495 753 Gene3D - 433 697 IPR042538 -
Vvi1g495 753 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g495 753 Gene3D - 142 301 IPR042533 -
Vvi1g495 753 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 15 735 IPR004870 GO:0005643|GO:0006913|GO:0017056
Vvi1g495 753 PANTHER BNAC05G49530D PROTEIN 15 735 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g495 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - vvi:100243944 1384.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g495 . . . . . . Bma14g01933 Bma15g00028 . . . . . . . . . Bhi07g00386 . . . . . . Cla07g00539 Cam07g0580 Cec07g0641 Cco07g0607 Clacu07g0584 Cmu07g0619 Cre07g0955 . . . . Lsi04g01104 . . Cme10g01618 . . Bda07g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34