Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g497 ATGTCTGTCTCCTCCGCCCTCAACGCGTTCAAGTCCTCAGCGCTCATATCATGGAAATCTCTTGGGAAGCTCCAGCAAACCATAGCGGGGTGTATTGAGAGGTCTGGCATCACTTTACACTCCGGCAGGGTTGCCAGGGTGAAGATATGGCCGGAGTGTGCTGGAGTTGGGAGATACTTCGACTTTCGATCCAATTTTATTCACCCTTCAGTCGATTACGTTCAGGAATCGCCTCTCTGCACCACGCTCTGCAAAGACGGCTACAAGGTTCGAACTGTCGAGCACTTGCTTTCGGCTTTGGAGGCAATGGGCGTCGATAATTGCAGAATCGAGGTGGAAGGTTTGAACGGAGAAGAGTCAAGTGTGGAGGTTCCTATTTTTGATGGGTCAGCAAAGGAATGGGTGGAAGCAATAGAGCAGGTTGGATTAAAGGTGGCAACAGATCAGGGTGGCAACAGTTGTGAGAAAATGATACCGTTTCTTATTGAACCTGTGCATGTGCATAGGAATGATTCTTTTATAGCAGCTTTCCCCTATCCCAAAGTTCAGATCATTTATGGAATTGATTTTCCACAGGTGCCTGCTATTGGTTGCCAGTGGTTCTCTTCAGCCTCTTTGGATGACTCTTTCTACACCAGTGAAATAGGTCCTTCAAGAACCTTTTGTGTTTATGAAGAGGTGGAGAAACTACGTAACTTGGGACTCATTAAAGGTGGCTCAACAGATAGTGCCATTGTTTGTAGTGCCAGTAAAGGTTGGCTGAATCCACCACTGCGTTTCCCTGACGAACCTTGTCGCCATAAGGTTTTAGATCTTATTGGTGACCTTTCCCTTTTTGCACGGCATGGTAGTCAAGGGTTTCCAGTGGCACAGATAGTTGGTTACAAGGGAGGCCATGCACTGCATGCAGATTTTGTACGGCGTCTGTCAGGAATCAGTTAA 942 47.24 MSVSSALNAFKSSALISWKSLGKLQQTIAGCIERSGITLHSGRVARVKIWPECAGVGRYFDFRSNFIHPSVDYVQESPLCTTLCKDGYKVRTVEHLLSALEAMGVDNCRIEVEGLNGEESSVEVPIFDGSAKEWVEAIEQVGLKVATDQGGNSCEKMIPFLIEPVHVHRNDSFIAAFPYPKVQIIYGIDFPQVPAIGCQWFSSASLDDSFYTSEIGPSRTFCVYEEVEKLRNLGLIKGGSTDSAIVCSASKGWLNPPLRFPDEPCRHKVLDLIGDLSLFARHGSQGFPVAQIVGYKGGHALHADFVRRLSGIS* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5477592 5485134 + Vvi1g497 Vvi1g497 769697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g497 313 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 25 308 IPR004463 GO:0008759|GO:0009245
Vvi1g497 313 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 309 IPR004463 GO:0008759|GO:0009245
Vvi1g497 313 Gene3D lpxc deacetylase, domain 2 161 312 IPR011334 GO:0008759|GO:0009245
Vvi1g497 313 Gene3D lpxc deacetylase, domain 1 23 149 IPR015870 GO:0008759|GO:0009245
Vvi1g497 313 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 23 313 IPR004463 GO:0008759|GO:0009245
Vvi1g497 313 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 310 IPR004463 GO:0008759|GO:0009245
Vvi1g497 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 309 IPR020568 -
Vvi1g497 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 144 IPR020568 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g497 K02535 - vvi:100266270 640.573