Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g498 ATGCTGATTTGCACGGCGCGTGAGAGGCCCAACACCCCGATTCGGCTCTGGATCTGCGGCTACGCGTTGCAGTGCGGGGTGCATGTGGTGCTGGTGTGGCTCGAGTACCGGAGGAGGAATAGGCGGCGGGTTCGCGATGAGGAACAGCAGCAGCAGCCGCAGCACTCAGATTCCGATGTCAATGATAGCGAGGACGAGGATGGAAATTCGAGCGCTTCGGGGGGTTTCAATCAGTCGAGTGTCACCAAACGGTGTGAATCAGTGAATACAATGGCATCATTTCTCTGGTGGATCGTTGGCTTCTATTGGGTGGTCTCTGGTGGTGAAGCCCTCCTGCAAAATGCTCCTCGTCTCTACTGGTTGGCTGTGGTATTTCTGGCATTTGATGTATTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGGATTGCTCTTTGCTGCTGTTTGCCTTGCATTATTGCAATTCTTTATGCTGTTGCTGGCCAGGAAGGTGCATCTGAGGCAGATCTCAGTATGCTTCCAAGATACAGGTTTGAAGCGAACAATGAAGAAAAGTCTGGTGTAGGAGCAGGCACAATGATTCCCACAGAAACGAGCAGTGGATACTTGGCAAATGAACGCATTCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTCCACTCATATGAAGATGGAACAAAACTGCCTGCACTCCCCTGCAACCCCCATTTCCCTTCTACATGCATTTCGAAATGGCTCAAAAAAAAAGCAACATGCCCCCTCTGTAAATACAAAATCCTCAAAGGAAGTGAACAAATTTTAAAAAAAAAAAGGAAACCTGCAAATAGCCTGATTCATCTACCCACTATCCTTGTGCACCAAAAAAATCAAGGGAGAAAAAATCTGGCTTCTCCCATACATTTATTAATTTGGGCTTCATCATGTGTTCTCTAG 942 47.13 MLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNRRRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFEANNEEKSGVGAGTMIPTETSSGYLANERILLPEDAECCICLHSYEDGTKLPALPCNPHFPSTCISKWLKKKATCPLCKYKILKGSEQILKKKRKPANSLIHLPTILVHQKNQGRKNLASPIHLLIWASSCVL* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5486106 5493034 - Vvi1g498 Vvi1g498 769698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g498 313 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 1 267 - -
Vvi1g498 313 SUPERFAMILY RING/U-box 206 264 - -
Vvi1g498 313 PANTHER TARGET OF ERK KINASE MPK-1 1 267 - -
Vvi1g498 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 267 IPR013083 -
Vvi1g498 313 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Vvi1g498 313 Pfam Ring finger domain 217 259 IPR001841 -
Vvi1g498 313 MobiDBLite consensus disorder prediction 44 79 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g498 - K13148 vvi:104879668 470.7