Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g499 ATGGCCATAGAATGTCTGGTTCTAGGCGCAGGGCAAGAGGTGGGGAAGAGCTGTGCAGTGGTGACCATCAATGGCAAGAGAATCATGTTCGATTGCGGCATGCACATGGGCTATCTCGACCACAGACGCTTTCCCGATTTCTCTCTCATTTCTAAATCCGCTGATTTCAACACCGCTATCGACTGTATCGTCATTACTCACTTTCACTTGGATCATGTTGGGGCTCTTCCTTACTTCACGGAAGTTTGTGGGTATAGCGGACCCATTTACATGACGGTAATACCAAAACAAGGGGGGGCTGTTTATTCGGTTAGGGGTTACAGATTCGGGAAACAAAAGGACATCAACGGGGAAAACCTACGCGGAAGCAGTGGTGCAATCAAAGGAGAAAGAGAGCGCAGCGGCGAGGGTGGAGCTAGGCAAGAGGGAGCTGAGCCGGATGGGCCCTTGGGCCACATGACGCCTCTGGTTCCTCCCCCTGTTAGGAGGGTTGGTCTGGGGATTCGTGGCCCGGACTCGCTCTGGTCTGTAATCTATTTTTTTGGTTTCTATATTGCAGTTATAGCAGTGGACCTGAAGCAGACTGTGCAGGTTGATAAGGATCTTCAGATCCGTGCCTACTATGCAGGACATGTTCTTGGGGCTGCAATGTTTTATGCAAAGGTTGGAGATGCTGCTATGGTGTATACAGGGGATTATAATATGACACCAGATAGGCATCTTGGAGCTGCTCAAATTGATCGATTACAGTTGGACCTTCTTATAACAGAGTCAACATATGCAACCACTGTTCGTGATTCAAAGTATGCTCGTGAGAGGGAATTTCTTAAAGCAGTTCACAAATGTGTAGCCGATGGAGGAAAAGTGCTAATTCCTACATTTGCTCTTGGAAGAGCTCAGGAACTTTGTATACTGTTGGACAATTATTGGGAGCGCATGAATCTAAAGGTTCCAATTTACTTTTCGGCAGGCTTGACCATTCAAGCTAATATGTACTATAAAATGCTTATCAGCTGGACCAACCAAAGAGTCAAGGAGACATATGCCACTCACAATGCATTTGATTTTAAAAATGTTCGGAGTTTTGACCGCTCTCTTATAAATGCTCCTGGACCCTGTGTTCTCTTTGCCACACCCGGGATGATCAGTGGTGGTTTTTCTCTTGAGGTTTTTAAGCTTTGGGCTCCATCTGAAATGAATCTTGTTACACTACCTGGGTATTGTTTGGCTGGAACTATAGGACACAAATTGACAACGGGTAAACCAACGAAAATTGATTTGGACAAAGACATCCAAATTAGCGTACGATGCCAGATTCATCAACTGTCTTTCAGTCCTCATACAGACGCCAAAGGGATTATGGATCTGGTCAAATTTCTCTCCCCCAAGCATGTAATACTTGTACATGGTGAGAAGCCTAAGATGGCTTCTCTTAAAGGAAAAATTGAGTCTGACCTAGGAATCCAATGTTATTATCCAGCAAATAATGATACCGTGTGCATTCCTTCAACTTGTTGGCTGAAAGCAGATACCTCAAAAACATTTATTCGGAGTTCCTTGAATCCAAATTTCAAGTTTGTAAAAACCATTTCAGAAGATAAATCAAACTTGGTTTCTAAAGAGACCGAAGCCACTTCAGTGCTGCAGGTGCATGATGAAAGGGTAGCTGAAGGGATCTTGATTGTGGAGAAAAGCAAGAAAGCAAAGGTTGTGCACCAGAATGAGCTTCTCCTCATGATAGGGAAGGATAAACATGATGTTCAGTTTGCTTATTGTTGCCCTAATGTGGTTTCCACATCTGATGAATGCTCTTGGCTTCACCTACTATTTGCAAAACTTGCAACCAAATTAGGAGGGAACATCCAAGATTTTGGTCAACATCTTCAAGTGGATTCCATCCATATCTCTGTATGTTTAAAGGACATCTGCCCTTACAGAACCACCGATGGCCCTCAAAAAGAACCAGCGGTGTTTTTTTGCTGCACTTGGTCAGTGGCAGATGTGAATCTTGCTTGGGAAATAATTTCAATTATGGAGAACTTGGATTTGAGTATAATTTAA 2061 43.77 MAIECLVLGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITHFHLDHVGALPYFTEVCGYSGPIYMTVIPKQGGAVYSVRGYRFGKQKDINGENLRGSSGAIKGERERSGEGGARQEGAEPDGPLGHMTPLVPPPVRRVGLGIRGPDSLWSVIYFFGFYIAVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRLQLDLLITESTYATTVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNYWERMNLKVPIYFSAGLTIQANMYYKMLISWTNQRVKETYATHNAFDFKNVRSFDRSLINAPGPCVLFATPGMISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTKIDLDKDIQISVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTCWLKADTSKTFIRSSLNPNFKFVKTISEDKSNLVSKETEATSVLQVHDERVAEGILIVEKSKKAKVVHQNELLLMIGKDKHDVQFAYCCPNVVSTSDECSWLHLLFAKLATKLGGNIQDFGQHLQVDSIHISVCLKDICPYRTTDGPQKEPAVFFCCTWSVADVNLAWEIISIMENLDLSII* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5493953 5552597 - Vvi1g499 Vvi1g499 769699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g499 686 Gene3D - 268 444 - -
Vvi1g499 686 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 501 IPR036866 -
Vvi1g499 686 SMART Beta_Casp_2 299 417 IPR022712 -
Vvi1g499 686 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 433 493 IPR011108 -
Vvi1g499 686 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 1 93 - -
Vvi1g499 686 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 187 680 - -
Vvi1g499 686 MobiDBLite consensus disorder prediction 118 154 - -
Vvi1g499 686 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 1 93 - -
Vvi1g499 686 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 187 680 - -
Vvi1g499 686 SMART Lactamase_B_5a 15 287 IPR001279 -
Vvi1g499 686 Gene3D - 3 99 IPR036866 -
Vvi1g499 686 MobiDBLite consensus disorder prediction 125 140 - -
Vvi1g499 686 Pfam Metallo-beta-lactamase superfamily 15 102 IPR001279 -
Vvi1g499 686 Pfam Beta-Casp domain 299 417 IPR022712 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g499 K13148 CPSF3L, INTS11; integrator complex subunit 11 [EC:3.1.27.-] - vvi:100261060 1142.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g499 . . . . . Bpe10g01000 . . . . . . . . . . Cpe01g01664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01889 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003480 1 12 1 1 1 1 1 1 1 1 3 1 1 0 1 1 1 2 1 1 1 1 1 3 1 2 1 2 1 1 47