Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g5 ATGAAGCTCAAAGCCCCCCAATCGAACCCTTTCGAGACCATTTGGTCTCGGACCAAGTTCGACATACTTGGCAAGAAGCGTAAAGGCGAACAAAAGCGTATCGGCTTGGCTCGATCTCGCGCCATCCAAAAGAGGAACGCCACACTGTTGAAGGAGTATGAACAAAGCGCCAAGTCTTCGGTTTTTCTTGATAAGAGAATTGGGGAGCAAAACGATGCGCTTGGGGAGTTCGATAAGGCGATTTTGCGGTCACAGCGTGAGCGTCAGTTGAAACTGAAGAAGAAAAGCAAATATAATTTATCTGATGGAGAAGAAGATGAATTTGAAATTGAAGGAGTTCCTTCATTTTCAGAAAGGGATGATTTTGAAGATGAAATGGTGCCCGACGATGATGATGATGATGGTGCAGAAGGAGCTGGAACTGAGAAAAAGCCAACGTTGTTGAAACAGGTTAACGCCCATGATATGCAGAATCAGTCACAAAGGGGTCTGATGGAGGGAGAGGAAAATAAACACAAAAGCAAAAAGGAAGTGATGGAGGAGATTATTTCAAAGAGCAAGTTTTACAAGGCCCAAAAAGCAAAAGATAGGGAAGAAAATGAACATTTGGTGGAAGAATTGGATAAGAACTTCACATCCTTAGTTCAGTCTGAGGCATTATTATCTTTGACTCGACCAGACAAAGTGAATGCTTTAAAGGCTCTTGTAAACAAGAGCATTCCAAATGAATATATGAAGAAAGATGATGTATCCGCTATGCAGCACATAAAATCTTTTAAGCAGGAACAACCTGATTCCTACGACAAAATTATAGGTGAGATGACATTGGATATGCGTGCTCGTCCATCAGACAGGACAAAAACGCCTGAAGAGATTGCCCAAGAGGAGAGAGAACGACTAGAGCGACTGGAGGAAGAGCGTCAGAAGAGAATGCTTGCTCCTAATGATTCCAGTGATGAAGAAGGTGATTCACGTGAAGATGCTGTTGAAGCATCTAACCAGAGGCTAAGATCTATTTCTGGGGATGATCTTGGTGATTCCTTCTCTCTTGATGTGCTGCCAGAGTCTAAGAAGGGCTGGGTTTATGAGGTTCTTGACAGAAAGGATACAAATGAGCTTGAAACGGAAGATTATGGATCTTCCGAGGAATCAGAAAGTCCTGAGAATGAGAGTGATGATGAAGGTTTTGAAAAAGATAATGATAATTGCGAAATGACTTCTTCCTTGAAGGACTGGGAACAGAGTGATGACGACAAACTTAGTACAGATTTGGAAGATAGTGGTAATGCAGAAATCAATAGAAACAATATTGATTCATTAGATGCCAAGAAAATAAAAACAAATGTTAAACATCCTTCGTCTCAACAAGATTCCATTCCTTACGTGATTAAAGCTCCAACCAGTTTGGAAGAATTGTTCATGTTGTTGGAGAATTGTTCTGATTCTGACATTGTTGAGATAATTCATCGAATTCGTATAAACAATGCAATCAGTCTTGCAGTAGAGAATCGGAAGAAAATGCAAGTATTTTATGGTGTATTATTGCAATATTTTGCTGTCTTGGCAAATAAAAAGCCATTAAATTTCAAGCTATTGAATTTGCTGGTCAAGCCATTAATGGAGATAAGTGTGGAGATCCCATACTTTGCAGCAATATGTGCTCGTCAACGGATATTACGGACTAGAATGCAATTCTGTGAGGCAATTAAAATCCCAGAGAAGAGTAGTTGGCCTTCTTTGAAAACATTATTTCTCCTGAGACTCTGGTCGATGATATTTCCATGCTCTGACTTTCGTCATGTTGTCATGACCCCAGCTACACTGTTGATGTGTGAATATCTGATGCGTTGTCCTATTTTATCTGGTTATGATATTGCCATTGGTTGTTTCTTGTGCTCCATGGTTCTCTCGGTTGTTAAACAATCTCGGAAGTTCTGTCCTGAAGCCATAATGTTTCTCCAAACTTTGTTAATGGTTGCTTTGGATGGAAACTCAAAATTATCTCAGGATTCTCAGTTTTATTTTTTCATGGAACTTAAAACGCTCAAGCCCCTGTTGGCAATACGAGGACATGTAGATGATCTTAGTCCTCTGGATTTCCTCACACTCATGGCCATGCCAGAGGGCTCTTCGTTTTTCAGCTCAGATAATTTCAGGGCTTGTGTGCTGGTATCCATCATTGAAACTCTACAAGGATTTGTTGATATTTATGGAGGATACAATTCATTTCCTGAAATTTTCTTGCCAATATCAACATTGTTACTTGCATTGGCAGAACAGGAAAACATGCCCAATGCATTGAAGGAGAAAATTAGAGGTGTTGAAGTGCTTATTAAGGAGAAAACTCATGAACACCATATGCTGCGTCAACCACTTCAAATGCGGAAACAAAAGCCAGTGCCTATCAAATTATTCAATCCAAAATTTGAGGAGAACTTTGTTAAGGGTAGAGACTATGATCCAGATCGTGAACGGGCTGAGCAGAGAAAATTGAAGAAACTTATAAAACAGGAGGCTAAGGGGGCAGCTCGTGAACTACGTAAAGATAATTATTTCTTATTTGAGGTAAAGAAAAGGGATAAGGCAATGCAGGAAGAAGAAAGAGCAGAGAAGTATGGGAAGGCAAGGGCATTTCTCCAAGAACAAGAACATGCTTTCAAATCTGGACAATTGGGAAAAGGCAGGAAGAGAAGGAGATGA 2700 40.22 MKLKAPQSNPFETIWSRTKFDILGKKRKGEQKRIGLARSRAIQKRNATLLKEYEQSAKSSVFLDKRIGEQNDALGEFDKAILRSQRERQLKLKKKSKYNLSDGEEDEFEIEGVPSFSERDDFEDEMVPDDDDDDGAEGAGTEKKPTLLKQVNAHDMQNQSQRGLMEGEENKHKSKKEVMEEIISKSKFYKAQKAKDREENEHLVEELDKNFTSLVQSEALLSLTRPDKVNALKALVNKSIPNEYMKKDDVSAMQHIKSFKQEQPDSYDKIIGEMTLDMRARPSDRTKTPEEIAQEERERLERLEEERQKRMLAPNDSSDEEGDSREDAVEASNQRLRSISGDDLGDSFSLDVLPESKKGWVYEVLDRKDTNELETEDYGSSEESESPENESDDEGFEKDNDNCEMTSSLKDWEQSDDDKLSTDLEDSGNAEINRNNIDSLDAKKIKTNVKHPSSQQDSIPYVIKAPTSLEELFMLLENCSDSDIVEIIHRIRINNAISLAVENRKKMQVFYGVLLQYFAVLANKKPLNFKLLNLLVKPLMEISVEIPYFAAICARQRILRTRMQFCEAIKIPEKSSWPSLKTLFLLRLWSMIFPCSDFRHVVMTPATLLMCEYLMRCPILSGYDIAIGCFLCSMVLSVVKQSRKFCPEAIMFLQTLLMVALDGNSKLSQDSQFYFFMELKTLKPLLAIRGHVDDLSPLDFLTLMAMPEGSSFFSSDNFRACVLVSIIETLQGFVDIYGGYNSFPEIFLPISTLLLALAEQENMPNALKEKIRGVEVLIKEKTHEHHMLRQPLQMRKQKPVPIKLFNPKFEENFVKGRDYDPDRERAEQRKLKKLIKQEAKGAARELRKDNYFLFEVKKRDKAMQEEERAEKYGKARAFLQEQEHAFKSGQLGKGRKRRR* 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 92039 107832 - Vvi1g5 Vvi1g5 769205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g5 899 MobiDBLite consensus disorder prediction 89 176 - -
Vvi1g5 899 MobiDBLite consensus disorder prediction 274 319 - -
Vvi1g5 899 Pfam Nop14-like family 7 884 IPR007276 GO:0032040
Vvi1g5 899 Coils Coil 862 882 - -
Vvi1g5 899 Coils Coil 290 313 - -
Vvi1g5 899 MobiDBLite consensus disorder prediction 376 399 - -
Vvi1g5 899 MobiDBLite consensus disorder prediction 122 136 - -
Vvi1g5 899 PANTHER NOP14 2 899 IPR007276 GO:0032040
Vvi1g5 899 MobiDBLite consensus disorder prediction 274 350 - -
Vvi1g5 899 MobiDBLite consensus disorder prediction 371 435 - -
Vvi1g5 899 MobiDBLite consensus disorder prediction 400 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g5 K14766 NOP14, UTP2; nucleolar protein 14 - vvi:100254292 1623.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g5 Blo01g00462 . Bda01g02118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0893 . . . . . . . . . . . . Bpe02g02306 Bma01g00132 . . . . . . . . . Cpe07g00094 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008534 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 33